Background
Methods
Bacteria and DNA isolation
Genome sequencing, assembly and annotation
Gene clustering and phylogenetic tree construction
Other computational analysis
Quality assurance
Initial findings
Genome structure
Phylogenetic relationship and comparison with closely related strains
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
| |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A
| --- | 99.98 | 98.9 | 98.93 | 98.86 | 98.79 | 98.89 | 98.83 | 98.86 | 98.87 | 98.79 | 98.81 | 98.85 | 98.84 | 98.64 | 98.67 |
B
| 99.99 | --- | 98.9 | 98.94 | 98.87 | 98.8 | 98.88 | 98.85 | 98.87 | 98.91 | 98.85 | 98.87 | 98.9 | 98.84 | 98.67 | 98.7 |
C
| 99.08 | 99.08 | --- | 99.23 | 99.89 | 99.88 | 99.07 | 98.92 | 99.06 | 98.91 | 99.01 | 99.03 | 99.02 | 98.99 | 98.85 | 98.94 |
D
| 99.05 | 99.04 | 99.19 | --- | 99.15 | 99.09 | 99.22 | 98.98 | 99.13 | 99.11 | 99.11 | 99.12 | 99.11 | 99.08 | 98.9 | 99.02 |
E
| 99.04 | 99.04 | 99.92 | 99.17 | --- | 99.87 | 99.09 | 98.94 | 99.05 | 98.98 | 99.04 | 99.05 | 99.03 | 99.03 | 98.89 | 99 |
F
| 98.94 | 98.94 | 99.86 | 99.1 | 99.92 | --- | 98.96 | 98.78 | 98.93 | 98.82 | 98.89 | 98.89 | 98.89 | 98.89 | 98.76 | 98.86 |
G
| 98.88 | 98.86 | 98.94 | 99.11 | 98.95 | 98.87 | --- | 98.84 | 98.93 | 98.95 | 98.88 | 98.93 | 98.93 | 98.93 | 98.6 | 98.78 |
H
| 98.84 | 98.83 | 98.97 | 98.99 | 98.94 | 98.85 | 98.92 | --- | 98.91 | 98.87 | 98.83 | 98.82 | 98.83 | 98.82 | 98.8 | 98.91 |
I
| 98.83 | 98.83 | 98.95 | 99.11 | 98.99 | 98.88 | 98.89 | 98.83 | --- | 98.91 | 98.91 | 98.95 | 98.94 | 98.86 | 98.66 | 98.83 |
J
| 98.81 | 98.79 | 98.81 | 98.96 | 98.81 | 98.7 | 98.83 | 98.76 | 98.82 | --- | 99.8 | 99.79 | 99.81 | 98.73 | 98.6 | 98.8 |
K
| 98.79 | 98.8 | 98.84 | 98.98 | 98.82 | 98.75 | 98.81 | 98.74 | 98.84 | 99.79 | --- | 99.96 | 99.96 | 98.77 | 98.58 | 98.72 |
L
| 98.76 | 98.76 | 98.81 | 98.92 | 98.8 | 98.7 | 98.81 | 98.68 | 98.73 | 99.78 | 99.93 | --- | 99.96 | 98.69 | 98.54 | 98.73 |
M
| 98.75 | 98.75 | 98.78 | 98.9 | 98.76 | 98.65 | 98.78 | 98.67 | 98.74 | 99.76 | 99.89 | 99.93 | --- | 98.68 | 98.49 | 98.73 |
N
| 98.58 | 98.58 | 98.6 | 98.64 | 98.58 | 98.49 | 98.43 | 98.72 | 98.75 | 98.62 | 98.53 | 98.54 | 98.65 | --- | 98.61 | 98.8 |
O
| 98.43 | 98.47 | 98.53 | 98.59 | 98.55 | 98.46 | 98.27 | 98.6 | 98.71 | 98.58 | 98.46 | 98.45 | 98.57 | 98.73 | --- | 99.27 |
P
| 98.27 | 98.33 | 98.44 | 98.57 | 98.47 | 98.34 | 98.23 | 98.64 | 98.56 | 98.5 | 98.34 | 98.39 | 98.54 | 98.7 | 98.99 | --- |
NCCP15655
|
NCCP15656
|
E24377A
| |
---|---|---|---|
Carbohydrates
| 514 (15.38) | 514 (15.46) | 547 (16.64) |
Clustering-based subsystems
| 299 (8.95) | 295 (8.87) | 274 (8.33) |
Amino acids and derivatives
| 251 (7.51) | 248 (7.46) | 250 (7.60) |
Cell wall and capsule
| 215 (6.43) | 213 (6.41) | 231 (7.03) |
Phages, prophages, transposable elements, plasmids
| 120 (3.59) | 117 (3.52) | 69 (2.10) |
Virulence, disease and defense
| 164 (4.91) | 163 (4.90) | 132 (4.01) |
Membrane transport
| 194 (5.80) | 193 (5.81) | 197 (5.99) |
Protein metabolism
| 181 (5.42) | 182 (5.48) | 188 (5.72) |
Cofactors, vitamins, prosthetic groups, pigments
| 174 (5.21) | 173 (5.20) | 191 (5.81) |
Stress response
| 175 (5.24) | 175 (5.26) | 174 (5.29) |
DNA metabolism
| 131 (3.92) | 129 (3.88) | 144 (4.38) |
Respiration
| 142 (4.25) | 142 (4.27) | 127 (3.86) |
Nucleosides and nucleotides
| 112 (3.35) | 112 (3.37) | 107 (3.25) |
Regulation and cell signaling
| 99 (2.96) | 99 (2.98) | 114 (3.47) |
RNA metabolism
| 103 (3.08) | 102 (3.07) | 105 (3.19) |
Motility and chemotaxis
| 89 (2.66) | 89 (2.68) | 61 (1.86) |
Nitrogen metabolism
| 60 (1.80) | 60 (1.81) | 62 (1.89) |
Fatty acids, lipids, and isoprenoids
| 58 (1.74) | 58 (1.74) | 63 (1.92) |
Miscellaneous
| 51 (1.53) | 51 (1.53) | 50 (1.52) |
Metabolism of aromatic compounds
| 42 (1.26) | 42 (1.26) | 33 (1.00) |
Phosphorus metabolism
| 38 (1.14) | 38 (1.14) | 39 (1.19) |
Cell division and cell cycle
| 32 (0.96) | 32 (0.96) | 36 (1.09) |
Iron acquisition and metabolism
| 31 (0.93) | 31 (0.93) | 30 (0.91) |
Sulfur metabolism
| 28 (0.84) | 27 (0.81) | 26 (0.79) |
Potassium metabolism
| 24 (0.72) | 24 (0.72) | 24 (0.73) |
Secondary metabolism
| 11 (0.33) | 11 (0.33) | 11 (0.33) |
Dormancy and sporulation
| 4 (0.12) | 4 (0.12) | 3 (0.09) |
Subsystem-assigned CDSs
| 3,342 (100.00) | 3,324 (100.00) | 3,288 (100.00) |