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Archives of Virology

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21.10.2020 | Brief Report

Genome sequencing and phylogenetic reconstruction reveal a potential fourth rhinovirus species and its worldwide distribution

verfasst von: Kim Tien Ng, Yutaka Takebe, Adeeba Kamarulzaman, Kok Keng Tee

Erschienen in: Archives of Virology | Ausgabe 1/2021

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Abstract

Genome sequences of members of a potential fourth rhinovirus (RV) species, provisionally denoted as rhinovirus A clade D, from patients with acute respiratory infection were determined. Bayesian coalescent analysis estimated that clade D emerged around the 1940s and diverged further around 2006-2007 into two distinctive sublineages (RV-A8-like and RV-A45-like) that harbored unique “clade-defining” substitutions. Similarity plots and bootscan mapping revealed a recombination breakpoint located in the 5ʹ-UTR region of members of the RV-A8-like sublineage. Phylogenetic reconstruction revealed the distribution of clade D viruses in the Asia Pacific region and in Europe, underlining its worldwide distribution.

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Titel: Genome sequencing and phylogenetic reconstruction reveal a potential fourth rhinovirus species and its worldwide distribution
verfasst von: Kim Tien Ng
Yutaka Takebe
Adeeba Kamarulzaman
Kok Keng Tee
Publikationsdatum: 21.10.2020
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 1/2021
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-020-04855-5

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