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Erschienen in: BMC Proceedings 7/2016

Open Access 01.10.2016 | Proceedings

Genome-wide association of trajectories of systolic blood pressure change

verfasst von: Anne E. Justice, Annie Green Howard, Geetha Chittoor, Lindsay Fernandez-Rhodes, Misa Graff, V. Saroja Voruganti, Guoqing Diao, Shelly-Ann M. Love, Nora Franceschini, Jeffrey R. O’Connell, Christy L. Avery, Kristin L. Young, Kari E. North

Erschienen in: BMC Proceedings | Sonderheft 7/2016

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Abstract

Background

There is great interindividual variation in systolic blood pressure (SBP) as a result of the influences of several factors, including sex, ancestry, smoking status, medication use, and, especially, age. The majority of genetic studies have examined SBP measured cross-sectionally; however, SBP changes over time, and not necessarily in a linear fashion. Therefore, this study conducted a genome-wide association (GWA) study of SBP change trajectories using data available through the Genetic Analysis Workshop 19 (GAW19) of 959 individuals from 20 extended Mexican American families from the San Antonio Family Studies with up to 4 measures of SBP. We performed structural equation modeling (SEM) while taking into account potential genetic effects to identify how, if at all, to include covariates in estimating the SBP change trajectories using a mixture model based latent class growth modeling (LCGM) approach for use in the GWA analyses.

Results

The semiparametric LCGM approach identified 5 trajectory classes that captured SBP changes across age. Each LCGM identified trajectory group was ranked based on the average number of cumulative years as hypertensive. Using a pairwise comparison of these classes the heritability estimates range from 12 to 94 % (SE = 17 to 40 %).

Conclusion

These identified trajectories are significantly heritable, and we identified a total of 8 promising loci that influence one’s trajectory in SBP change across age. Our results demonstrate the potential utility of capitalizing on extant genetic data and longitudinal SBP assessments available through GAW19 to explore novel analytical methods with promising results.
Literatur
1.
Zurück zum Zitat Chalmers J, MacMahon S, Mancia G, Whitworth J, Beilin L, Hansson L, Neal B, Rodgers A, Ni Mhurchu C, Clark T. 1999 World Health Organization-International Society of Hypertension Guidelines for the management of hypertension. Guidelines sub-committee of the World Health Organization. Clin Exp Hypertens. 1999;21(5-6):1009–60.CrossRefPubMed Chalmers J, MacMahon S, Mancia G, Whitworth J, Beilin L, Hansson L, Neal B, Rodgers A, Ni Mhurchu C, Clark T. 1999 World Health Organization-International Society of Hypertension Guidelines for the management of hypertension. Guidelines sub-committee of the World Health Organization. Clin Exp Hypertens. 1999;21(5-6):1009–60.CrossRefPubMed
2.
Zurück zum Zitat Levy D, DeStefano AL, Larson MG, O’Donnell CJ, Lifton RP, Gavras H, Cupples LA, Myers RH. Evidence for a gene influencing blood pressure on chromosome 17. Genome scan linkage results for longitudinal blood pressure phenotypes in subjects from the framingham heart study. Hypertension. 2000;36(4):477–83.CrossRefPubMed Levy D, DeStefano AL, Larson MG, O’Donnell CJ, Lifton RP, Gavras H, Cupples LA, Myers RH. Evidence for a gene influencing blood pressure on chromosome 17. Genome scan linkage results for longitudinal blood pressure phenotypes in subjects from the framingham heart study. Hypertension. 2000;36(4):477–83.CrossRefPubMed
3.
4.
Zurück zum Zitat Hossain A, Beyene J. Analysis of baseline, average, and longitudinally measured blood pressure data using linear mixed models. BMC Proc. 2014;8 Suppl 1:S80.CrossRefPubMedPubMedCentral Hossain A, Beyene J. Analysis of baseline, average, and longitudinally measured blood pressure data using linear mixed models. BMC Proc. 2014;8 Suppl 1:S80.CrossRefPubMedPubMedCentral
5.
Zurück zum Zitat Cho SC, Yoo HJ, Park M, Cho IH, Kim BN, Kim JW, Shin MS, Park TW, Son JW, Chung US, et al. Genome-wide association scan of korean autism spectrum disorders with language delay: a preliminary study. Psychiatry Investig. 2011;8(1):61–6.CrossRefPubMedPubMedCentral Cho SC, Yoo HJ, Park M, Cho IH, Kim BN, Kim JW, Shin MS, Park TW, Son JW, Chung US, et al. Genome-wide association scan of korean autism spectrum disorders with language delay: a preliminary study. Psychiatry Investig. 2011;8(1):61–6.CrossRefPubMedPubMedCentral
6.
Zurück zum Zitat Connolly JJ, Glessner JT, Hakonarson H. A genome-wide association study of autism incorporating autism diagnostic interview-revised, autism diagnostic observation schedule, and social responsiveness scale. Child Dev. 2013;84(1):17–33.CrossRefPubMed Connolly JJ, Glessner JT, Hakonarson H. A genome-wide association study of autism incorporating autism diagnostic interview-revised, autism diagnostic observation schedule, and social responsiveness scale. Child Dev. 2013;84(1):17–33.CrossRefPubMed
7.
Zurück zum Zitat Arnedo J, Svrakic DM, Del Val C, Romero-Zaliz R, Hernández-Cuervo H, Molecular Genetics of Schizophrenia Consortium, Fanous AH, Pato MT, Pato CN, de Erausquin GA, et al. Uncovering the hidden risk architecture of the schizophrenias: confirmation in three independent genome-wide association studies. Am J Psychiatry. 2015;172(2):139–53.CrossRefPubMed Arnedo J, Svrakic DM, Del Val C, Romero-Zaliz R, Hernández-Cuervo H, Molecular Genetics of Schizophrenia Consortium, Fanous AH, Pato MT, Pato CN, de Erausquin GA, et al. Uncovering the hidden risk architecture of the schizophrenias: confirmation in three independent genome-wide association studies. Am J Psychiatry. 2015;172(2):139–53.CrossRefPubMed
8.
Zurück zum Zitat Hoadley KA, Yau C, Wolf DM, Cherniack AD, Tamborero D, Ng S, Leiserson MD, Niu B, McLellan MD, Uzunangelov V, et al. Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell. 2014;158(4):929–44.CrossRefPubMedPubMedCentral Hoadley KA, Yau C, Wolf DM, Cherniack AD, Tamborero D, Ng S, Leiserson MD, Niu B, McLellan MD, Uzunangelov V, et al. Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell. 2014;158(4):929–44.CrossRefPubMedPubMedCentral
9.
Zurück zum Zitat Londono D, Chen KM, Musolf A, Wang R, Shen T, Brandon J, Herring JA, Wise CA, Zou H, Jin M, Yu L, et al. A novel method for analyzing genetic association with longitudinal phenotypes. Stat Appl Genet Mol Biol. 2013;12(2):241–61.PubMed Londono D, Chen KM, Musolf A, Wang R, Shen T, Brandon J, Herring JA, Wise CA, Zou H, Jin M, Yu L, et al. A novel method for analyzing genetic association with longitudinal phenotypes. Stat Appl Genet Mol Biol. 2013;12(2):241–61.PubMed
10.
Zurück zum Zitat Jones B, Nagin D, Roeder K. A SAS procedure based on mixture models for estimating developmental trajectories. Sociol Methods Res. 2001;29:374–93.CrossRef Jones B, Nagin D, Roeder K. A SAS procedure based on mixture models for estimating developmental trajectories. Sociol Methods Res. 2001;29:374–93.CrossRef
11.
Zurück zum Zitat Nagin DS. Group-based trajectory modeling: an overview. Ann Nutr Metab. 2014;65(2-3):205–10.CrossRefPubMed Nagin DS. Group-based trajectory modeling: an overview. Ann Nutr Metab. 2014;65(2-3):205–10.CrossRefPubMed
12.
Zurück zum Zitat Almasy L, Dyer TD, Peralta JM, Jun G, Wood AR, Fuchsberger C, Almeida MA, Kent Jr JW, Fowler S, Blackwell TW, et al. Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees. BMC Proc. 2014;8 Suppl 1:S2.CrossRefPubMedPubMedCentral Almasy L, Dyer TD, Peralta JM, Jun G, Wood AR, Fuchsberger C, Almeida MA, Kent Jr JW, Fowler S, Blackwell TW, et al. Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees. BMC Proc. 2014;8 Suppl 1:S2.CrossRefPubMedPubMedCentral
13.
Zurück zum Zitat Tobin MD, Sheehan NA, Scurrah KJ, Burton PR. Adjusting for treatment effects in studies of quantitative traits: antihypertensive therapy and systolic blood pressure. Stat Med. 2005;24(19):2911–35.CrossRefPubMed Tobin MD, Sheehan NA, Scurrah KJ, Burton PR. Adjusting for treatment effects in studies of quantitative traits: antihypertensive therapy and systolic blood pressure. Stat Med. 2005;24(19):2911–35.CrossRefPubMed
14.
Zurück zum Zitat Kato N, Takeuchi F, Tabara Y, Kelly TN, Go MJ, Sim X, Tay WT, Chen CH, Zhang Y, Yamamoto K, et al. Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians. Nat Genet. 2011;43(6):531–8.CrossRefPubMedPubMedCentral Kato N, Takeuchi F, Tabara Y, Kelly TN, Go MJ, Sim X, Tay WT, Chen CH, Zhang Y, Yamamoto K, et al. Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians. Nat Genet. 2011;43(6):531–8.CrossRefPubMedPubMedCentral
15.
Zurück zum Zitat Levy D, Ehret GB, Rice K, Verwoert GC, Launer LJ, Dehghan A, Glazer NL, Morrison AC, Johnson AD, Aspelund T, et al. Genome-wide association study of blood pressure and hypertension. Nat Genet. 2009;41(6):677–87.CrossRefPubMedPubMedCentral Levy D, Ehret GB, Rice K, Verwoert GC, Launer LJ, Dehghan A, Glazer NL, Morrison AC, Johnson AD, Aspelund T, et al. Genome-wide association study of blood pressure and hypertension. Nat Genet. 2009;41(6):677–87.CrossRefPubMedPubMedCentral
16.
Zurück zum Zitat Newton-Cheh C, Johnson T, Gateva V, Tobin MD, Bochud M, Coin L, Najjar SS, Zhao JH, Heath SC, Eyheramendy S, et al. Genome-wide association study identifies eight loci associated with blood pressure. Nat Genet. 2009;41(6):666–76.CrossRefPubMedPubMedCentral Newton-Cheh C, Johnson T, Gateva V, Tobin MD, Bochud M, Coin L, Najjar SS, Zhao JH, Heath SC, Eyheramendy S, et al. Genome-wide association study identifies eight loci associated with blood pressure. Nat Genet. 2009;41(6):666–76.CrossRefPubMedPubMedCentral
17.
Zurück zum Zitat He J, Kelly TN, Zhao Q, Li H, Huang J, Wang L, Jaquish CE, Sung YJ, Shimmin LC, Lu F, et al. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. Circ Cardiovasc Genet. 2013;6(6):598–607.CrossRefPubMedPubMedCentral He J, Kelly TN, Zhao Q, Li H, Huang J, Wang L, Jaquish CE, Sung YJ, Shimmin LC, Lu F, et al. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. Circ Cardiovasc Genet. 2013;6(6):598–607.CrossRefPubMedPubMedCentral
18.
Zurück zum Zitat Franceschini N, Kelly TN, Zhao Q, Li H, Huang J, Wang L, Jaquish CE, Sung YJ, Shimmin LC, Lu F, et al. Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations. Am J Hum Genet. 2013;93(3):545–54.CrossRefPubMedPubMedCentral Franceschini N, Kelly TN, Zhao Q, Li H, Huang J, Wang L, Jaquish CE, Sung YJ, Shimmin LC, Lu F, et al. Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations. Am J Hum Genet. 2013;93(3):545–54.CrossRefPubMedPubMedCentral
19.
Zurück zum Zitat Bhatnagar P, Barron-Casella E, Bean CJ, Milton JN, Baldwin CT, Steinberg MH, Debaun M, Casella JF, Arking DE. Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease. PLoS One. 2013;8(9):e74193.CrossRefPubMedPubMedCentral Bhatnagar P, Barron-Casella E, Bean CJ, Milton JN, Baldwin CT, Steinberg MH, Debaun M, Casella JF, Arking DE. Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease. PLoS One. 2013;8(9):e74193.CrossRefPubMedPubMedCentral
20.
Zurück zum Zitat Hu LT, Bentler PM. Cutoff criteria for fit indexes in covariance structure analysis: conventional criteria versus new alternatives. Struct Equ Modeling. 1999;6(1):1–55.CrossRef Hu LT, Bentler PM. Cutoff criteria for fit indexes in covariance structure analysis: conventional criteria versus new alternatives. Struct Equ Modeling. 1999;6(1):1–55.CrossRef
21.
Zurück zum Zitat Bentler PM. Comparative fit indexes in structural models. Psychol Bull. 1990;107(2):238–46.CrossRefPubMed Bentler PM. Comparative fit indexes in structural models. Psychol Bull. 1990;107(2):238–46.CrossRefPubMed
22.
Zurück zum Zitat Tucker L, Lewis C. A reliability coefficient for maximum likelihood factor analysis. Psychometrika. 1973;38(1):1–10.CrossRef Tucker L, Lewis C. A reliability coefficient for maximum likelihood factor analysis. Psychometrika. 1973;38(1):1–10.CrossRef
23.
Zurück zum Zitat Nagin DS. Analyzing developmental trajectories: a semiparametric, group-based approach. Psychol Methods. 1999;4(2):139–57.CrossRef Nagin DS. Analyzing developmental trajectories: a semiparametric, group-based approach. Psychol Methods. 1999;4(2):139–57.CrossRef
24.
Zurück zum Zitat Nagin D. Group-based modeling of development. Cambridge: Harvard University Press; 2005.CrossRef Nagin D. Group-based modeling of development. Cambridge: Harvard University Press; 2005.CrossRef
25.
Zurück zum Zitat Andruff H, Carraro N, Thompson A, Gaudreau P. Latent class growth modelling: a tutorial. Tutor Quant Methods Psychol. 2009;5(1):11–24.CrossRef Andruff H, Carraro N, Thompson A, Gaudreau P. Latent class growth modelling: a tutorial. Tutor Quant Methods Psychol. 2009;5(1):11–24.CrossRef
26.
Zurück zum Zitat Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006;38(8):904–9.CrossRefPubMed Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006;38(8):904–9.CrossRefPubMed
27.
Zurück zum Zitat Quillen EE, Voruganti VS, Chittoor G, Rubicz R, Peralta JM, Almeida MA, Kent Jr JW, Diego VP, Dyer TD, Comuzzie AG, et al. Evaluation of estimated genetic values and their application to genome-wide investigation of systolic blood pressure. BMC Proc. 2014;8 Suppl 1:S66.CrossRefPubMedPubMedCentral Quillen EE, Voruganti VS, Chittoor G, Rubicz R, Peralta JM, Almeida MA, Kent Jr JW, Diego VP, Dyer TD, Comuzzie AG, et al. Evaluation of estimated genetic values and their application to genome-wide investigation of systolic blood pressure. BMC Proc. 2014;8 Suppl 1:S66.CrossRefPubMedPubMedCentral
29.
Zurück zum Zitat O’Connell JR. MMAP user guide. Baltimore: University of Maryland; 2014. O’Connell JR. MMAP user guide. Baltimore: University of Maryland; 2014.
30.
Zurück zum Zitat Voruganti VS, Kent Jr JW, Debnath S, Cole SA, Haack K, Göring HH, Carless MA, Curran JE, Johnson MP, Almasy L, et al. Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans. Front Genet. 2013;4:279.CrossRefPubMedPubMedCentral Voruganti VS, Kent Jr JW, Debnath S, Cole SA, Haack K, Göring HH, Carless MA, Curran JE, Johnson MP, Almasy L, et al. Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans. Front Genet. 2013;4:279.CrossRefPubMedPubMedCentral
Metadaten
Titel
Genome-wide association of trajectories of systolic blood pressure change
verfasst von
Anne E. Justice
Annie Green Howard
Geetha Chittoor
Lindsay Fernandez-Rhodes
Misa Graff
V. Saroja Voruganti
Guoqing Diao
Shelly-Ann M. Love
Nora Franceschini
Jeffrey R. O’Connell
Christy L. Avery
Kristin L. Young
Kari E. North
Publikationsdatum
01.10.2016
Verlag
BioMed Central
Erschienen in
BMC Proceedings / Ausgabe Sonderheft 7/2016
Elektronische ISSN: 1753-6561
DOI
https://doi.org/10.1186/s12919-016-0050-9

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