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Erschienen in: Archives of Virology 10/2009

01.10.2009 | Brief Report

Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean

verfasst von: Moon Nam, Sang Mok Kim, Leslie L. Domier, Serry Koh, Jung Kyung Moon, Hong Soo Choi, Hong Gi Kim, Jae Sun Moon, Su-Heon Lee

Erschienen in: Archives of Virology | Ausgabe 10/2009

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Abstract

The viral genome of soybean yellow mottle mosaic virus (SYMMV) from infected soybean (Glycine max) in Korea was cloned and sequenced. The complete monopartite single-stranded RNA genome of SYMMV consists of 4009 base pairs with six putative open reading frames and includes 5′- and 3′-untranslated regions of 39 and 229 nucleotides, respectively. The nucleotide and coat protein sequences of SYMMV share the highest sequence identity with those of cowpea mottle virus. Based on its genomic organization, its predicted amino acid sequence, and its phylogenetic relatedness to known carmoviruses, we report that SYMMV is a new member of the genus Carmovirus in the family Tombusviridae.
Literatur
1.
2.
Zurück zum Zitat Boonham N, Henry CM, Wood KR (1998) The characterization of a subgenomic RNA and in vitro translation products of Oat chlorotic stunt virus. Virus Genes 16:141–145PubMedCrossRef Boonham N, Henry CM, Wood KR (1998) The characterization of a subgenomic RNA and in vitro translation products of Oat chlorotic stunt virus. Virus Genes 16:141–145PubMedCrossRef
3.
Zurück zum Zitat Carrington JC, Heaton LA, Zuidema D, Hillman BI, Morris TJ (1989) The genome structure of Turnip crinkle virus. Virology 170:219–226PubMedCrossRef Carrington JC, Heaton LA, Zuidema D, Hillman BI, Morris TJ (1989) The genome structure of Turnip crinkle virus. Virology 170:219–226PubMedCrossRef
4.
Zurück zum Zitat Ciuffreda P, Rubino L, Russo M (1998) Molecular cloning and complete nucleotide sequence of Galinsoga mosaic virus genomic RNA. Arch Virol 143:173–180PubMedCrossRef Ciuffreda P, Rubino L, Russo M (1998) Molecular cloning and complete nucleotide sequence of Galinsoga mosaic virus genomic RNA. Arch Virol 143:173–180PubMedCrossRef
5.
Zurück zum Zitat Cohen Y, Qu F, Gisel A, Morris TJ, Zambryski PC (2000) Nuclear localization of Turnip crinkle virus movement protein p8. Virology 273:276–285PubMedCrossRef Cohen Y, Qu F, Gisel A, Morris TJ, Zambryski PC (2000) Nuclear localization of Turnip crinkle virus movement protein p8. Virology 273:276–285PubMedCrossRef
6.
Zurück zum Zitat Demski JW, Kuhn CW, Sinclair JB (1989) Virus diseases. In: Sinclair JB, Backman PA (eds) Compendium of soybean disease, 3rd edn. APS Press, St Paul, pp 50–51 Demski JW, Kuhn CW, Sinclair JB (1989) Virus diseases. In: Sinclair JB, Backman PA (eds) Compendium of soybean disease, 3rd edn. APS Press, St Paul, pp 50–51
7.
Zurück zum Zitat Diez J, Marcos JF, Pallas V (1998) Carmovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81. Plant virology protocols—from virus isolation to transgenic resistance. Humana Press, Totowa, pp 211–217 Diez J, Marcos JF, Pallas V (1998) Carmovirus isolation and RNA extraction. In: Foster GD, Taylor SC (eds) Methods in molecular biology, vol 81. Plant virology protocols—from virus isolation to transgenic resistance. Humana Press, Totowa, pp 211–217
8.
Zurück zum Zitat Guilley H, Carrington JC, Balàzs E, Jonard G, Richards K, Morris TJ (1985) Nucleotide sequence and genome organization of Carnation mottle virus RNA. Nucleic Acids Res 13:6663–6677PubMedCrossRef Guilley H, Carrington JC, Balàzs E, Jonard G, Richards K, Morris TJ (1985) Nucleotide sequence and genome organization of Carnation mottle virus RNA. Nucleic Acids Res 13:6663–6677PubMedCrossRef
9.
Zurück zum Zitat Heame PQ, Knorr DA, Hillman BI, Morris TJ (1990) The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus. Virology 177:141–151CrossRef Heame PQ, Knorr DA, Hillman BI, Morris TJ (1990) The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus. Virology 177:141–151CrossRef
10.
Zurück zum Zitat Huang M, Koh DCY, Weng LJ, Chang ML, Yap YK, Zhang L, Wong SM (2000) Complete nucleotide sequence and genome organization of Hibiscus chlorotic ringspot virus, a new member of the genus Carmovirus: evidence for the presence and expression of two novel open reading frames. J Virol 74:3149–3155PubMedCrossRef Huang M, Koh DCY, Weng LJ, Chang ML, Yap YK, Zhang L, Wong SM (2000) Complete nucleotide sequence and genome organization of Hibiscus chlorotic ringspot virus, a new member of the genus Carmovirus: evidence for the presence and expression of two novel open reading frames. J Virol 74:3149–3155PubMedCrossRef
11.
Zurück zum Zitat Navarro JA, Genoves A, Climent J, Sauri A, Martinez-Gil L, Mingarro I, Pallas V (2006) RNA-binding properties and membrane insertion of Melon necrotic spot virus (MNSV) double gene block movement proteins. Virology 356:57–67PubMedCrossRef Navarro JA, Genoves A, Climent J, Sauri A, Martinez-Gil L, Mingarro I, Pallas V (2006) RNA-binding properties and membrane insertion of Melon necrotic spot virus (MNSV) double gene block movement proteins. Virology 356:57–67PubMedCrossRef
12.
Zurück zum Zitat Nutter RC, Scheets K, Panganiban LC, Lommel SA (1989) The complete nucleotide sequence of the Maize chlorotic mottle virus genome. Nucleic Acids Res 17:3163–3177PubMedCrossRef Nutter RC, Scheets K, Panganiban LC, Lommel SA (1989) The complete nucleotide sequence of the Maize chlorotic mottle virus genome. Nucleic Acids Res 17:3163–3177PubMedCrossRef
13.
Zurück zum Zitat Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358PubMed Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358PubMed
14.
Zurück zum Zitat Rico P, Hernandez C (2004) Complete nucleotide sequence and genome organization of Pelargonium flower break virus. Arch Virol 149:641–651PubMedCrossRef Rico P, Hernandez C (2004) Complete nucleotide sequence and genome organization of Pelargonium flower break virus. Arch Virol 149:641–651PubMedCrossRef
15.
Zurück zum Zitat Riviere CJ, Rochon KM (1990) Nucleotide sequence and genomic organization of Melon necrotic spot virus. J Gen Virol 71:1887–1896PubMedCrossRef Riviere CJ, Rochon KM (1990) Nucleotide sequence and genomic organization of Melon necrotic spot virus. J Gen Virol 71:1887–1896PubMedCrossRef
16.
Zurück zum Zitat Rochon DM, Tremaine JH (1989) Complete nucleotide sequence of the Cucumber necrosis virus genome. Virology 169:251–259PubMedCrossRef Rochon DM, Tremaine JH (1989) Complete nucleotide sequence of the Cucumber necrosis virus genome. Virology 169:251–259PubMedCrossRef
17.
Zurück zum Zitat Rubino L, Russo M (1997) Molecular analysis of the Pothos latent virus genome. J Gen Virol 78:1219–1226PubMed Rubino L, Russo M (1997) Molecular analysis of the Pothos latent virus genome. J Gen Virol 78:1219–1226PubMed
18.
Zurück zum Zitat Ryabov EV, Generozov EV, Kendall TL, Lommel SA, Zavriev SK (1994) Nucleotide sequence of Carnation ringspot dianthovirus RNA-1. J Gen Virol 75:243–247PubMedCrossRef Ryabov EV, Generozov EV, Kendall TL, Lommel SA, Zavriev SK (1994) Nucleotide sequence of Carnation ringspot dianthovirus RNA-1. J Gen Virol 75:243–247PubMedCrossRef
19.
Zurück zum Zitat Skotnicki ML, Mackenzie AM, Torroen M, Gibbs AJ (1993) The genomic sequence of Cardamine chlorotic fleck carmovirus. J Gen Virol 74:1933–1937PubMedCrossRef Skotnicki ML, Mackenzie AM, Torroen M, Gibbs AJ (1993) The genomic sequence of Cardamine chlorotic fleck carmovirus. J Gen Virol 74:1933–1937PubMedCrossRef
20.
Zurück zum Zitat Suzuki S, Hase S, Takahashi H, Ikegami M (2002) The genome organization of Pea stem necrosis virus and its assignment to the genus Carmovirus. Intervirology 45(3):160–163PubMedCrossRef Suzuki S, Hase S, Takahashi H, Ikegami M (2002) The genome organization of Pea stem necrosis virus and its assignment to the genus Carmovirus. Intervirology 45(3):160–163PubMedCrossRef
21.
Zurück zum Zitat Takemoto Y, Kanehira T, Shinohara M, Yamashita S, Hibi T (2000) The nucleotide sequence and genome organization of Japanese iris necrotic ring virus, a nep species in the genus Carmovirus. Arch Virol 145:651–657PubMedCrossRef Takemoto Y, Kanehira T, Shinohara M, Yamashita S, Hibi T (2000) The nucleotide sequence and genome organization of Japanese iris necrotic ring virus, a nep species in the genus Carmovirus. Arch Virol 145:651–657PubMedCrossRef
22.
Zurück zum Zitat Turina M, Maruoka M, Monis J, Jackson AO, Scholthof KG (1998) Nucleotide sequence and infectivity of a full-Length cDNA clone of Panicum mosaic virus. Virology 241:141–155PubMedCrossRef Turina M, Maruoka M, Monis J, Jackson AO, Scholthof KG (1998) Nucleotide sequence and infectivity of a full-Length cDNA clone of Panicum mosaic virus. Virology 241:141–155PubMedCrossRef
23.
Zurück zum Zitat Wang J, Simon AE (1997) Analysis of the two subgenomic RNA promoters for Turnip crinkle virus in vivo and in vitro. Virology 232:174–186PubMedCrossRef Wang J, Simon AE (1997) Analysis of the two subgenomic RNA promoters for Turnip crinkle virus in vivo and in vitro. Virology 232:174–186PubMedCrossRef
24.
Zurück zum Zitat Weng Z, Xiong Z (1997) Genome organization and gene expression of Saguaro cactus carmovirus. J Gen Virol 78:525–534PubMed Weng Z, Xiong Z (1997) Genome organization and gene expression of Saguaro cactus carmovirus. J Gen Virol 78:525–534PubMed
25.
Zurück zum Zitat White KA, Skuzeski JM, Li W, Wei N, Morris TJ (1982) Immunodetection, expression strategy and complementation of turnip crinkle virus p28 and p88 replication components. Virology 211:525–534CrossRef White KA, Skuzeski JM, Li W, Wei N, Morris TJ (1982) Immunodetection, expression strategy and complementation of turnip crinkle virus p28 and p88 replication components. Virology 211:525–534CrossRef
26.
Zurück zum Zitat Xi D, Li J, Han C, Li D, Yu J, Zhou X (2008) Complete nucleotide sequence of a new strain of Tobacco necrosis virus A infecting soybean in China and infectivity of its full-length cDNA clone. Virus Genes 36:259–266PubMedCrossRef Xi D, Li J, Han C, Li D, Yu J, Zhou X (2008) Complete nucleotide sequence of a new strain of Tobacco necrosis virus A infecting soybean in China and infectivity of its full-length cDNA clone. Virus Genes 36:259–266PubMedCrossRef
27.
Zurück zum Zitat You XJ, Kim JW, Stuart GW, Bozarth RF (1995) The nucleotide sequence of Cowpea mottle virus and its assignment to the genus Carmovirus. J Gen Virol 76:2841–2845PubMedCrossRef You XJ, Kim JW, Stuart GW, Bozarth RF (1995) The nucleotide sequence of Cowpea mottle virus and its assignment to the genus Carmovirus. J Gen Virol 76:2841–2845PubMedCrossRef
Metadaten
Titel
Nucleotide sequence and genomic organization of a newly identified member of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean
verfasst von
Moon Nam
Sang Mok Kim
Leslie L. Domier
Serry Koh
Jung Kyung Moon
Hong Soo Choi
Hong Gi Kim
Jae Sun Moon
Su-Heon Lee
Publikationsdatum
01.10.2009
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 10/2009
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0480-z

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