Skip to main content
Erschienen in: Archives of Virology 2/2009

01.02.2009 | Brief Report

The complete nucleotide sequence of potato virus T

verfasst von: M. Russo, L. Rubino, A. De Stradis, Giovanni P. Martelli

Erschienen in: Archives of Virology | Ausgabe 2/2009

Einloggen, um Zugang zu erhalten

Abstract

Potato virus T (PVT), a member of an unassigned species in the family Flexiviridae, has a genome 6,539 nt in size with three ORFs coding for replication-associated proteins (185 kDa, ORF 1), movement protein (40 kDa, ORF 2) and coat protein (24 kDa, ORF 3), respectively. PVT differs from the type members of all genera of the family Flexiviridae with a 30K-type movement protein and is phylogenetically distant from all of these viruses, least so from grapevine virus A (GVA, genus Vitivirus), with which it groups in all trees. The viral genome resembles that of trichoviruses but is smaller and does not contain the 3′ terminal fourth ORF found in some members of this genus. PTV may represent a new genus of plant viruses for which the provisional name of Andesvirus is proposed.
Literatur
1.
Zurück zum Zitat Adams MJ, Accotto GP, Agranovsky AA, Bar-Joseph M, Boscia D, Brunt AA, Candresse T, Coutts RHA, Dolja VV, Falk BW, Foster GD, Gonsalves D, Jelkmann W, Karasov A, Martelli GP, Mawassi M, Milne RG, Minafra A, Murant AF, Namba S, Rowhani A, Vetten HJ, Vishinichenko VK, Wisler GC, Yoshikawa N, Zavriev SK (2005) Family Flexiviridae. In: Mayo FauquetCM, MA ManiloffJ, Desselberger U, Ball LA (eds) Virus taxonomy. Eight Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 956–960 Adams MJ, Accotto GP, Agranovsky AA, Bar-Joseph M, Boscia D, Brunt AA, Candresse T, Coutts RHA, Dolja VV, Falk BW, Foster GD, Gonsalves D, Jelkmann W, Karasov A, Martelli GP, Mawassi M, Milne RG, Minafra A, Murant AF, Namba S, Rowhani A, Vetten HJ, Vishinichenko VK, Wisler GC, Yoshikawa N, Zavriev SK (2005) Family Flexiviridae. In: Mayo FauquetCM, MA ManiloffJ, Desselberger U, Ball LA (eds) Virus taxonomy. Eight Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 956–960
2.
Zurück zum Zitat Altschul SF, Stephen F, Gish W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed Altschul SF, Stephen F, Gish W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed
3.
Zurück zum Zitat Bar-Joseph M, Martelli GP (1991) Capillovirus. In: Francki RIB, Fauquet CM, Knudson DL, Brown F (Eds) Classification and Nomenclature of Viruses. Fifth Report of the International Committee on Taxonomy of Viruses. Arch Virol Suppl 2:339–340 Bar-Joseph M, Martelli GP (1991) Capillovirus. In: Francki RIB, Fauquet CM, Knudson DL, Brown F (Eds) Classification and Nomenclature of Viruses. Fifth Report of the International Committee on Taxonomy of Viruses. Arch Virol Suppl 2:339–340
4.
Zurück zum Zitat Candresse T, Namba S, Martelli GP (1995) Genus Trichovirus. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds) Virus taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Austria, pp 486–570 Candresse T, Namba S, Martelli GP (1995) Genus Trichovirus. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds) Virus taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Austria, pp 486–570
5.
Zurück zum Zitat German S, Candresse T, Lanneau M, Huet JC, Pernollet JC, Dunez J (1990) Nucleotide sequence and genomic organization of apple chlorotic leaf spot closterovirus. Virology 179:104–112PubMedCrossRef German S, Candresse T, Lanneau M, Huet JC, Pernollet JC, Dunez J (1990) Nucleotide sequence and genomic organization of apple chlorotic leaf spot closterovirus. Virology 179:104–112PubMedCrossRef
6.
Zurück zum Zitat Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) ClustalW2 and ClustalX version 2. Bioinformatics 23:2947–2948PubMedCrossRef Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) ClustalW2 and ClustalX version 2. Bioinformatics 23:2947–2948PubMedCrossRef
7.
Zurück zum Zitat Marck C (1988) DNA Strider: a “C” program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res 16:1829–1836PubMedCrossRef Marck C (1988) DNA Strider: a “C” program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res 16:1829–1836PubMedCrossRef
8.
Zurück zum Zitat Martelli GP, Agranovsky AA, Bar-Joseph M, Boscia D, Candresse T, Coutts RHA, Dolja VV, Duffus JE, Falk BW, Gonsalves D, Jelkmann W, Karasev A, Minafra A, Murant AF, Namba S, Nibblett CL, Vetten HJ, Yoshikawa N (2000) Genus Trichovirus. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, pp 956–960 Martelli GP, Agranovsky AA, Bar-Joseph M, Boscia D, Candresse T, Coutts RHA, Dolja VV, Duffus JE, Falk BW, Gonsalves D, Jelkmann W, Karasev A, Minafra A, Murant AF, Namba S, Nibblett CL, Vetten HJ, Yoshikawa N (2000) Genus Trichovirus. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, pp 956–960
9.
Zurück zum Zitat Martelli GP, Conti M, Minafra A (2001) Grapevine virus A. AAB Descript. Plant Viruses No. 383 Martelli GP, Conti M, Minafra A (2001) Grapevine virus A. AAB Descript. Plant Viruses No. 383
10.
Zurück zum Zitat Martelli GP, Adams MJ, Kreuze JF, Dolja VV (2007) Family Flexiviridae: a case study in virion and genome plasticity. Annu Rev Phytopathol 45:73–100PubMedCrossRef Martelli GP, Adams MJ, Kreuze JF, Dolja VV (2007) Family Flexiviridae: a case study in virion and genome plasticity. Annu Rev Phytopathol 45:73–100PubMedCrossRef
11.
Zurück zum Zitat Matthews REF (1982) Classification and Nomenclature of Viruses. Fourth Report of the International Committee on Taxonomy of Viruses. Intervirology 17, No. 1–3 Matthews REF (1982) Classification and Nomenclature of Viruses. Fourth Report of the International Committee on Taxonomy of Viruses. Intervirology 17, No. 1–3
12.
Zurück zum Zitat Minafra A, Saldarelli P, Martelli GP (1997) Grapevine virus A: nucleotide sequence, genome organization and relationships in the Trichovirus genus. Arch Virol 142:417–423PubMedCrossRef Minafra A, Saldarelli P, Martelli GP (1997) Grapevine virus A: nucleotide sequence, genome organization and relationships in the Trichovirus genus. Arch Virol 142:417–423PubMedCrossRef
13.
Zurück zum Zitat Ochi M, Kashiwazaki S, Hiratsuka K, Namba S, Tsuchizaki T (1992) Nucleotide sequence of the 3′-terminal region of Potato virus T RNA. Ann Phytopath Soc Japan 58:416–425 Ochi M, Kashiwazaki S, Hiratsuka K, Namba S, Tsuchizaki T (1992) Nucleotide sequence of the 3′-terminal region of Potato virus T RNA. Ann Phytopath Soc Japan 58:416–425
14.
Zurück zum Zitat Page RD (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358PubMed Page RD (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358PubMed
15.
Zurück zum Zitat Rice P, Longden I, Bleasby A (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16:276–277PubMedCrossRef Rice P, Longden I, Bleasby A (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16:276–277PubMedCrossRef
16.
Zurück zum Zitat Salazar LF (1972) Deteccion de virus en indices de tuberculos y indices de plantas de papa. Investig Agropecuarias Peru 3:3–9 Salazar LF (1972) Deteccion de virus en indices de tuberculos y indices de plantas de papa. Investig Agropecuarias Peru 3:3–9
17.
Zurück zum Zitat Salazar LF, Harrison BD (1977) Two previously undescribed potato viruses from South America. Nature 265:337–338PubMedCrossRef Salazar LF, Harrison BD (1977) Two previously undescribed potato viruses from South America. Nature 265:337–338PubMedCrossRef
18.
Zurück zum Zitat Salazar LF, Harrison BD (1978) Host range, purification and properties of potato virus T. Ann Appl Biol 89:223–235CrossRef Salazar LF, Harrison BD (1978) Host range, purification and properties of potato virus T. Ann Appl Biol 89:223–235CrossRef
19.
Zurück zum Zitat Salazar LF, Harrison BD (1978b) Potato virus T. CMI/AAB Descript. Plant Viruses No. 187 Salazar LF, Harrison BD (1978b) Potato virus T. CMI/AAB Descript. Plant Viruses No. 187
20.
Zurück zum Zitat Saldarelli P, Boscia D, De Stradis A, Vovlas C (2008) A new member of the family Flexiviridae from Phlomis fruticosa. J Plant Pathol 90:281–286 Saldarelli P, Boscia D, De Stradis A, Vovlas C (2008) A new member of the family Flexiviridae from Phlomis fruticosa. J Plant Pathol 90:281–286
21.
Zurück zum Zitat Vives MC, Galipienso L, Navarro L, Moreno P, Guerri J (2001) The nucleotide sequence and genomic organization of citrus leaf blotch virus: candidate species for a new virus genus. Virology 287:225–233PubMedCrossRef Vives MC, Galipienso L, Navarro L, Moreno P, Guerri J (2001) The nucleotide sequence and genomic organization of citrus leaf blotch virus: candidate species for a new virus genus. Virology 287:225–233PubMedCrossRef
22.
Zurück zum Zitat White JL, Kaper JM (1989) A simple method for detection of viral satellite RNAs in small tissue samples. J Virol Methods 23:83–94PubMedCrossRef White JL, Kaper JM (1989) A simple method for detection of viral satellite RNAs in small tissue samples. J Virol Methods 23:83–94PubMedCrossRef
23.
Zurück zum Zitat Yoshikawa, N (2000) Apple stem grooving virus. AAB Descript. Plant Viruses No. 376 Yoshikawa, N (2000) Apple stem grooving virus. AAB Descript. Plant Viruses No. 376
24.
Zurück zum Zitat Yoshikawa, N (2001) Apple chlorotic leaf spot virus. AAB Descript. Plant Viruses No. 386 Yoshikawa, N (2001) Apple chlorotic leaf spot virus. AAB Descript. Plant Viruses No. 386
25.
Zurück zum Zitat Yoshikawa N, Sasaki E, Kato M, Takahashi T (1992) The nucleotide sequence of apple stem grooving capillovirus genome. Virology 191:98–105PubMedCrossRef Yoshikawa N, Sasaki E, Kato M, Takahashi T (1992) The nucleotide sequence of apple stem grooving capillovirus genome. Virology 191:98–105PubMedCrossRef
Metadaten
Titel
The complete nucleotide sequence of potato virus T
verfasst von
M. Russo
L. Rubino
A. De Stradis
Giovanni P. Martelli
Publikationsdatum
01.02.2009
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 2/2009
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-008-0300-x

Weitere Artikel der Ausgabe 2/2009

Archives of Virology 2/2009 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Alphablocker schützt vor Miktionsproblemen nach der Biopsie

16.05.2024 alpha-1-Rezeptorantagonisten Nachrichten

Nach einer Prostatabiopsie treten häufig Probleme beim Wasserlassen auf. Ob sich das durch den periinterventionellen Einsatz von Alphablockern verhindern lässt, haben australische Mediziner im Zuge einer Metaanalyse untersucht.

Neue S3-Leitlinie zur unkomplizierten Zystitis: Auf Antibiotika verzichten?

15.05.2024 Harnwegsinfektionen Nachrichten

Welche Antibiotika darf man bei unkomplizierter Zystitis verwenden und wovon sollte man die Finger lassen? Welche pflanzlichen Präparate können helfen? Was taugt der zugelassene Impfstoff? Antworten vom Koordinator der frisch überarbeiteten S3-Leitlinie, Prof. Florian Wagenlehner.

Schadet Ärger den Gefäßen?

14.05.2024 Arteriosklerose Nachrichten

In einer Studie aus New York wirkte sich Ärger kurzfristig deutlich negativ auf die Endothelfunktion gesunder Probanden aus. Möglicherweise hat dies Einfluss auf die kardiovaskuläre Gesundheit.

Intervallfasten zur Regeneration des Herzmuskels?

14.05.2024 Herzinfarkt Nachrichten

Die Nahrungsaufnahme auf wenige Stunden am Tag zu beschränken, hat möglicherweise einen günstigen Einfluss auf die Prognose nach akutem ST-Hebungsinfarkt. Darauf deutet eine Studie an der Uniklinik in Halle an der Saale hin.

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.