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Archives of Virology

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16.06.2017 | Brief Report

Genome dynamics and evolution of codon usage patterns in shrimp viruses

verfasst von: Anuj Tyagi, B. T. Naveen Kumar, Niraj K. Singh

Erschienen in: Archives of Virology | Ausgabe 10/2017

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Abstract

We analysed the genomes and codon usage patterns of seven small (DNA and RNA) shrimp viruses. Effective number of codon (ENC) values indicated moderate (35 < ENC < 50) codon usage bias in shrimp viruses. Correlation analysis between GC compositions at non-synonymous codon and synonymous codon positions (GC1, 2 and GC3) as well as GC3 versus ENC curves indicated varying influences of mutational pressure on codon usage. The presence of deoptimized codons and host-antagonistic codon usage trends in shrimp viruses suggested the adaptation of a slow replication strategy by these viruses to avoid host defences. Low CpG frequencies indicated that shrimp viruses have evolved with underrepresentation of CpGs to avoid the host’s immune response.

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Titel: Genome dynamics and evolution of codon usage patterns in shrimp viruses
verfasst von: Anuj Tyagi
B. T. Naveen Kumar
Niraj K. Singh
Publikationsdatum: 16.06.2017
Verlag: Springer Vienna
Erschienen in: Archives of Virology / Ausgabe 10/2017
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-017-3445-7

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