Background
Dysgerminomas are rare ovarian tumors most common in adolescent women, representing 5–10% of all malignant ovarian tumors in the first two decades of life. They arise from germ cells within the gonad and represent the ovarian counterpart of testicular seminoma[
1]. Histologically and clinically dysgerminomas are classified as type II Germ Cell Tumors (GCT).
The female germ cells enter meiosis during intrauterine development (11–12 weeks of gestation), whereas for the male germ cells this only happens after the onset of puberty. This could explain the difference in incidence of the type II gonadal GCTs between females and males and the median age of clinical manifestation. In fact, the number of target cells (PGCs/gonocytes) for initiation is significantly lower in females compared with males [
2].
RNF139/TRC8 (NM_007218; henceforth,
TRC8) is a potential tumor suppressor gene (TSG) with similarity to
PTCH [
3]. Mutations in
PTCH result in predisposition to basal cell carcinoma and medulloblastoma, while its inactivation leads to cell proliferation [
4‐
6].
TRC8 was identified in a family with the constitutional translocation t(3;8)(p14.2;q24.1), and hereditary renal cell carcinoma (RCC) and thyroid cancer[
3,
7,
8]. Recently, a second, independent, family with hereditary kidney cancer was discovered that carries a cytogenetically indistinguishable translocation and a VHL mutation. [
9]. Secondary loss of the wild type
TRC8 allele was observed in a subset of tumor cells, consistent with tumor suppressor function. TRC8 is a membrane-bound E3 ubiquitin ligase that inhibits the growth of cells in a ubiquitylation-dependent manner [
10]. Interestingly, its level and stability are modulated by cholesterol and it interacts with components of the lipid homeostatic machinery, especially INSIG and the lipid-regulated transcription factors, SREBP1/2 [
11]. A frequent genetic alteration in both hereditary and sporadic RCC is mutation of
VHL, which encodes the targeting subunit of another ubiquitin ligase complex responsible for degrading hypoxia inducible factors, HIF1/2 alpha. TRC8 interacts with VHL and, in fruit flies, knockdown of either gene led to a similar embryonic phenotype [
12]. Thus alterations in TRC8 have the potential to affect cellular growth control and possibly its linkage to lipid homeostasis and/or hypoxia responses.
TRC8 has been identified as a target of the Translin (TSN) gene in postmeiotic male germ cells, and testis is known to contain higher levels of
TRC8 mRNA than other tissues[
3]. TSN, formerly known as testis brain-RNA binding protein, is found in the cytoplasm and functions as a posttranscriptional regulator of a group of genes transcribed by the transcription factor CREM-tau. Cho
et al.[
13] identified four new TSN target mRNAs encoding diazepam-binding inhibitor-like 5, arylsulfatase A, a tetratricopeptide repeat structure-containing protein, and
TRC8. These observations suggest an important function for
TRC8 in germ cells. Here, we describe a paternally inherited balanced translocation t(8;22) in a proposita with dysgerminoma. The breakpoints of the translocation are located within the LCR-B low copy repeat on chromosome 22q11.21, containing the palindromic AT-rich repeat (PATRR) involved in recurrent and non-recurrent translocations and in an AT-rich sequence inside intron 1 of the TRC8 tumor-suppressor gene at 8q24.13. This translocation raises the possibility that disruption of
TRC8 may contribute to development of the proposita's dysgerminoma.
Methods
Clinical report
The proband is the only one child born to healthy non-consanguineous parents with an unremarkable family history. Neither cancers nor miscarriages were reported among her relatives. She was born at term after an uneventful pregnancy. At birth, her growth parameters were normal. The neonatal period was normal. She was referred to our Institute at the age of 11 years because of persistent abdominal pain with fever and evidence of a pelvic solid mass discovered with ultrasonography in another hospital.
A total body CT scan upon admission showed a large (17 × 12 × 10 cm) inhomogeneous and necrotic mass arising from the pelvis with important displacement of the urinary tracts and bilateral hydronephrosis; a concomitant peritoneal fluid was also present in the pouch of Douglas.
No distant lesions were detected in other abdominal organs, CNS and lungs. The Tc-99 scintigraphy was negative for bone lesions. Among serum markers, only LDH (12980 U/L) (N.V. 84–362 U/L) and β-hCG (113 U/L) (N.V. <5 U/L) were abnormal for age, suggesting the hypothesis of a germinal tumor. A surgical approach was decided as first treatment. During surgery, a tumoral mass arising from the left ovary was completely resected with consensual monolateral annessectomy; a biopsy of the contra lateral ovary and a sample of peritoneal fluid were also sampled for histological evaluation.
Histological analysis confirmed a classic dysgerminoma of the ovary without evidence of tumoral cells in other tissue samples. No chemotherapy was administered after surgery according to Italian protocol (TCG 2004) for stage 1 ovarian dysgerminoma and the patient was discharged with a follow-up program. Nine months after the diagnosis the patient is healthy and shows normal β-hCG values for age.
Hystology and Immunohistochemistry
Formalin-fixed paraffin-embedded tissue specimens were cut from paraffin blocks and stained with hematoxylin and eosin for microscopic examination. Immunohistochemical labelling was performed by a three-step indirect immunoperoxidase technique. Formalin fixed, paraffin embedded, 3 micron serial tissue sections were incubated at room temperature for 30 minutes with the antibodies reported in Table
1. Additional sections were incubated overnight at 4°C with a rabbit polyclonal antibody against the C-terminus of the p145 human c-kit protein (Oncogene, Boston, MA, USA) and with hypoxia-related antibodies: anti-HIF-2α mAb (clone ep190p, Abcam; Cambridge, UK), anti-VEGF polyclonal Ab (Santa Cruz Biotechnology; Santa Cruz, CA), anti-FGFR (clone VBS1, Chemicon; Temecula, CA), anti-VHL (clone 3F391, Abcam), anti-CA IX polyclonal Ab (Abcam), anti-COX2 polyclonal Ab (Abcam), anti-IGF1R (clone SPM138, Abcam). A monoclonal antibody anti-RNF139/TRC8 (Abcam) was used on normal fallopian tube and dysgerminoma specimens from our proposita.
anti-MNF116 cytokeratin mAb) | (clone MNF116, Dako; Glostrup, Denmark |
anti-AE1/AE3 cytokeratin mAb | (clone AE1/AE3, Dako) |
anti-CD66e mAb | (clone 12-140-10, Novocastra; Newcastle, UK) |
anti-EMA mAb | (clone GP1.4, Novocastra) |
anti-vimentin mAb | (clone V9, Novocastra) |
anti-PLAP mAb | (clone 8A9, Novocastra) |
anti-beta HCG mAB | (Novocastra) |
anti-NSE mAb | (clone 5E2, Novocastra) |
anti-GFAP mAb | (clone GA5, Novocastra) |
anti-desmin mAb | (clone DE-R-11, Novocastra) |
anti-Ki 67 mAb | (clone MIB-1, Dako) |
anti-CD31 mAb | (clone JC70A, Dako) |
anti-CD45 | (clone T29/33, Dako) |
anti-CD68 mAb | (clone KP1, Dako) |
anti-CD117 | polyclonal Ab (Dako) |
p145 human c-kit protein | (Oncogene, Boston, MA, USA) |
CD30 | (Clone BER-H2)Dako |
S100 | Polyclonal Ab, Dako |
CD3 | Polyclonal Ab, Dako |
CD20 | Clone L26, Dako |
CD45 | Clone T29/33, Dako |
CD56 | Clone CD564, Novocastra |
Synaptophysin | Clone SY38, Dako |
Chromogranin A | Clone DAK-A3, Dako |
Sections were subsequently incubated at room temperature with anti-mouse or anti-rabbit Ig antibodies conjugated to peroxidase-labelled dextran polymer (Dako). The chromogen 3, 3-diaminobenzidine was used in the presence of hydrogen peroxide. Slides were counterstained with Mayer's haematoxylin.
Negative controls were performed using blocking serum in place of primary antibody. Positive and negative controls were run in parallel with each batch, and appropriate results were obtained. Finally, histochemical reaction of cryosectioned tumor was used to evaluate lipid deposition. Cryosections were fixed in 10% neutral buffered formalin. Samples were stained with Oil Red "O" kit (Diapath, Martinengo, Italy).
Cytogenetics investigations
Chromosome preparations were made from cultured lymphocytes from the proposita and her parents using standard high-resolution techniques. To define the breakpoint of the translocation we used fluorescent in situ hybridization (FISH) with BAC clones spanning the chromosomal 8q24.1 and 22q11.2 regions selected according to the University of California Santa Cruz (UCSC) Human Genome Assembly (March 2006 assembly).
FISH analysis on paraffin embedded tumoral tissue
To prepare paraffin-embedded tissue sections fixed on positively charged slides, we cut 4 – 5 μm thick paraffin sections using a microtome. Floating sections were mounted on positively charged slides. To deparaffinize specimens, slides were treated by Paraffin Pretreatment Kit (Abbott Molecular Inc., IL, USA) and treated with protease, then hybridization was performed with the appropriate Vysis protocol.
Array – CGH analysis
Molecular karyotyping was performed using the Human Genome CGH Microarray Kits 44B and 244A (Agilent Technologies, Palo Alto, CA, USA) covering the whole genome with a resolution of ~100 kb and ~35 Kb, respectively. Briefly, 1 μg of patient and sex-matched pooled reference DNAs were processed according to the manufacturer's protocol. Fluorescence was scanned in a dual-laser scanner and the images were extracted and analyzed with Agilent Feature Extraction software (v9.5.3.1) and CGH Analytics software (v3.5.14) respectively. Changes in test DNA copy number at a specific locus are observed as the deviation of the log ratio value from a modal value of 0.
Generation of somatic cell hybrids
Somatic cell hybrid clones were generated by fusing the HPRT-negative RJK88 Chinese hamster cell line with lymphoblastoid cell lines (LCLs) from the patient[
14].
DNA extraction and genotyping
Genomic DNA from fresh and frozen samples was extracted using a standard proteinase K digestion, followed by phenol/chloroform extraction, and resuspended in water. FFPE material from rolled sections was extracted using the QiaAmp DNA Mini Kit (Qiagen) according to manufacturer's instructions, with minor modifications. DNA quantitation was determined by spectrophotometry (NanoDrop, Thermo Scientific, Wilmington, DE). Other genomic DNAs from tissues and cell lines were extracted with DNAzol (MRC, Inc, Cincinnati, OH). Genotyping of polymorphic loci was performed by amplification with primers labeled with fluorescent probes (ABI 5-Fam, Hex and Tet) followed by analysis on an ABI 310 Genetic Analyzer (Applied Biosystems). Non-polymorphic loci were assayed by electrophoresis on agarose gels. All primers were purchased from MWG Biotech AG (Ebersberg, Germany). The sequences of all primers used are available from the authors.
Southern blot analysis was conducted on 5 μg aliquots of genomic DNA cut with SacI and PstI restriction enzymes. The DNAs were separated on 0.8% agarose/0.5× TBE gels, transferred to Hybond-N+ (GE Healthcare, Italy), hybridized to non-radioactively labelled probes (Gene Images Random-Prime DNA Labeling kit, GE Healthcare, Italy) and detected with CDP-Star detection reagent (GE Healthcare, Italy).
Expression analysis
Total RNA was extracted from all tissues and cell lines with Trizol (Invitrogen, Milano, Italy) following manufacturer's protocols. Additional Human Tissue Total RNA was purchased from Stratagene. cDNA synthesis was performed with Ready-To-Go You-Prime First strand beads (Amersham) and random hexamers; Non-quantitative RT-PCR was performed in 25 μl reactions, using JumpStart Red ACCUTaq LA DNA polymerase (Sigma) and the following protocol: 1 min at 96°C; 30 cycles of 30 sec at 94°C/30 sec at 58°C/2 min at 68°C; 5 min at 68°C final elongation time; PCR products were analysed on 1.5% agarose TAE gels. G3PDH amplification primers and protocol were from Clontech.
Quantitative gene expression was assessed by Real-Time Quantitative PCR (RT-Q-PCR) on a 7900 HT Sequence Detection System (Applied Biosystems) using SYBR®Green PCR Master Mix (Applied Biosystems). Validation experiments demonstrated that amplification efficiencies of the control and all target amplicons were approximately equal (not shown); accordingly, relative quantification of DNA amount was obtained using the Comparative CT method (described in Applied Biosystems User Bulletin #2, December 11, 1997: ABI PRISM 7700 Sequence Detection System).
TRC8 mutation and CpG island methylation analysis
Primer pairs were selected covering the promoter region (1 pair), exon 1 (1 pair), and the protein coding region of exon 2 (4 pairs) of the TRC8 gene. PCRs were performed in 25 μl reactions, using JumpStart Red ACCUTaq LA DNA polymerase (Sigma) and the following protocol: 30 sec at 96°C; 35 cycles of 30 sec at 94°C/30 sec at 60°C/2 min at 68°C; 10 min at 68°C final elongation time; 5% DMSO was added to promoter and exon 1 PCRs. All PCR products were analysed on 1.5% agarose TAE gels.
We also analyzed CpG methylation of the TRC8 promoter-associated CpG island. Bisulphite treatment was carried out as described by Kubota
et al.[
15]. Methylation levels were tested by sequencing and restriction mapping of the fragments amplified from bisulphite-treated DNA with TaqI restriction enzyme. The VHL gene was sequenced from tumor and normal DNA according to the methods described by Poland
et al. [
9].
Discussion
We report a girl who developed a dysgerminoma at the age of 10 years and carries a balanced translocation t(8;22)(q24.13;q11.21). The breakpoints of our proposita may be identical to those recently described by Gotter
et al., [
20]. In that case, the proband showed an unbalanced translocation with a supernumerary der(22) derived as a result of 3:1 meiotic malsegregation of the paternal balanced translocation 46, XY, t(8;22)(q24.13;q11.21). The proband showed an abnormal phenotype, while his father was apparently normal. Interestingly, a breakpoint within the first intron of the
TRC8 gene has been described as an inherited rearrangement associated with renal cell carcinoma in two unrelated families[
3,
9,
21,
22]. In our case, we have localized the breakpoint to a 700 bp region in intron 1 of the
TCR8 gene, containing an
AluSp and a 180 bp (AT)n simple repeat. The breakpoint is probably positioned, as in the family described by Gotter
et al.[
20], in a palindrome within the simple repeat. In our case and in Gotter
et al.[
20], the breakpoint on chromosome 22 lies within the PATRR on 22q11. The analysis of many unrelated t(11;22)(q23;q11) cases revealed that the breakpoints occur within palindromic PATRRs on 11q23 and 22q11 (PATRR11 and PATRR22). The majority of the breakpoints, including the case described by Gotter
et al.[
20], are localized to the centre of the PATRRs, suggesting that the palindrome mid-point is susceptible to double-strand breaks (DSBs); this would occur as the result of a cruciform extrusion promoting the DSBs that initiate stabilizing rearrangements or recombination events[
23]. The PATRR22 appears to be highly unstable in the human genome[
24]. Palindrome-mediated genomic instability contributes to a variety of genome rearrangements including not only constitutional translocations, but also large germ line deletions[
25]. Cancer-related gross chromosomal rearrangements and genomic amplification are also reported to be associated with palindromic DNA[
26,
27]. Recent studies have produced a detailed map showing that palindromes tend to cluster at specific regions, some of which undergo gene amplification[
28]. Individual tumors seem to have a non-random distribution of palindromes in their genomes, and a subset of palindromic loci is associated with gene amplification. Inverted repeats or palindromes are known to generate hairpins or cruciform structures, facilitated by intrastrand pairing of complementary single-strand DNA sequences assembled in the lagging strand during DNA replication. A double-strand break (DSB) introduced in these hairpins can result in deletions or in either inter- or intrachromosomal recombination events mediated by the homologous recombination machinery[
26,
28].
TRC8 encodes an endoplasmic reticulum-resident E3-ubiquitin ligase with multiple transmembrane segments. TRC8 contains a C-terminal RING-H2 domain shown to catalyze
in vitro ubiquitylation reactions[
10,
11]. In
Drosophila and mammalian cells, over-expressed TRC8 suppressed growth[
11,
12,
29]. In HEK293 cells, TRC8 induced G2/M arrest and accumulation of sub-G1 cells indicative of apoptosis[
11]. These effects were dependent upon an ubiquitylation-competent RING domain, suggesting that specific substrates were critical to growth inhibition. Tumor formation in a nude mouse model was also inhibited by TRC8 in a RING-dependent manner. TRC8 contains a putative sterol-sensing domain (SSD) which in other proteins confers sensitivity to sterols, affecting either stability or trafficking between membrane compartments[
3]. Moreover, knock-down of endogenous TRC8 increased levels of the lipid homeostasis transcription factors, the SREBPs and their target genes, including enzymes of cholesterol and lipid metabolism [
11]. However, these effects were only evident in cells simultaneously depleted of sterols, since cholesterol-replete cells contain very low amounts of TRC8. Importantly, expression of activated SREBP-1 partially restored the growth of TRC8-inhibited cells [
11], indicating that changes in lipid regulation underlie some of the growth inhibitory actions of this tumor suppressor. Since these data suggested that TRC8 activity linked growth control to the cholesterol/lipid homeostasis pathway, we analyzed two SREBP target genes,
HMGCR and
SCD1, in control and tumor tissue (Fig.
6). However, expression levels were depressed compared to normal ovarian tissues. This could be due to lack of proper control tissues (germ cells as opposed to whole ovary) or perhaps more likely to the presence of plentiful lipids, since the effects of
TRC8 loss are most readily observed following sterol-depletion [
11].
Interestingly,
TRC8 expression appeared down-regulated in tumor tissue (Fig.
6) while TRC8 protein was not detectable in tumor tissue by IHC (Fig.
1). This was despite the absence of any evidence for loss, genetic alteration or promoter methylation of the remaining
TRC8 allele. We surmise that additional mechanisms reducing
TRC8 expression may be involved in this dysgerminoma. For example, the 3' UTR of
TRC8 contains target sites for multiple microRNAs (miR), several of which are highly conserved among human, mouse, rat, dog and chicken (miR-218, -101, -27, -128, -375). In addition, the coding sites for some of these miRs are found on the aneuploid chromosomes observed in this tumor (i.e., miR-218-1 is on chromosome 4). It is possible that miRNAs are mediating the additional loss of expression for this gene. Recently, the stabilization of specific miRNAs by Translin in male germ cells has been reported[
30].
In our patient Translin (TSN), a protein involved in post-transcriptional regulation of TRC8 and of a number of genes during spermatogenesis, is expressed two times less in the dysgerminoma than in normal ovary.
Translin, formerly known as testis brain-RNA binding protein (TB-RBP), is both a DNA-binding and RNA-binding protein. As a DNA binding protein, it interacts with the breakpoint junctions of chromosomal translocations[
31,
32]. Translin also mediates intracellular and intercellular mRNA transport, possibly controlling the temporal and spatial translation of specific mRNAs in postmeiotic germ cells [
33‐
35]. Kasai
et al. [
36] have proposed that human Translin may play a role in DNA recombination, repair, and metabolism, but deficiencies in somatic recombination or DNA repair are not readily detectable in mice lacking
Tsn [
37]. However, the marked increase in apoptosis of spermatocytes in
Tsn-null mice suggests a role for
TSN during meiosis, perhaps functioning as a post-transcriptional regulator in spermatocytes [
37]. Recently, Cho
et al. [
13] identified four meiotic mRNA targets of Translin, one of which is
TRC8. They hypothesized that disruption of the precise regulation of
TRC8 may cause the growth retardation and the increased apoptosis in pachytene spermatocytes observed in
Tsn-null mice [
37]. To our knowledge, there are no studies of the role of the
TSN gene in female meiosis.
TRC8 is a potent TSG involved in different tissue-specific pathways. Its haploinsufficiency may facilitate the development of CC-RCC in association with VHL mutations, or otherwise lead to increased risk for other types of tumor. Any role in dysgeminoma may relate to its interaction with translin. We envision a model whereby one copy of TRC8 is disrupted by palindrome-mediated translocation (step 1), then, in a second step, translin, miRNA, or another yet undiscovered mechanism leads to further loss of TCR8 expression, setting the stage for deregulated proliferation.
Competing interests
The authors declare that they have no competing interests.
Authors' contributions
RMG, RG, GG, OZ, and CG contributed to the writing of this paper. Experimental work was done by SG, SB, HAD, PF and AG. All authors read and approved the final manuscript.