Background
Methods
Patients characteristics
DNA isolation
Tetra-ARMS PCR (tetra-primer ARMS PCR)
SNP ID | Primer sequences | Product size (bp) | |
---|---|---|---|
rs5498 | F inner | GAGCACTCAAGGGGAGGTCACCCTCG | G allele (189) |
R inner | TCACTCACAGAGCACATTCACGGTCACATT | A allele (274) | |
F outer | ATCTCATCGTGTTTTTCCAGATGGCCCC | Control band (407) | |
R outer | CCCATTATGACTGCGGCTGCTACCACA | ||
rs4811528 | F inner | ATAAACCTTGGCAAGCTCAAGGTCAGGGTT | A allele (179) |
R inner | CACTCCTCCCACCTTAAGGGCTTCTCC | G allele (259) | |
F outer | GCTGTGTTGCTGTGTGAGCCTGGATAAG | Control band (383) | |
R outer | TGGAATAGTCGATGGTGAGCAGGAGACC | ||
rs7270785 | F inner | CTTATCTCAAACCATAACCAACCTGCACC | T allele (201) |
R inner | CAAGCTACAATGTTCCCACACAGGAGCA | G allele (291) | |
F outer | CAAGCTACAATGTTCCCACACAGGAGCA | Control band (435) | |
R outer | CTTCTCCAATTGTCTGGGCAGCGTAGTG | ||
rs1024611 | F outer | GGCTGAGTGTTCACATAGGCTTCTGAGT | Control band (281) |
R outer | AACTTCCAAAGCTGCCTCCTCAGAGT |
PCR-RFLP
Validation assay
Statistical analysis
Results
Patients ‘baseline characteristics
Characteristics | DS | No DS | P value |
---|---|---|---|
Number of samples | 18 | 115 | |
Gender (Male/Female) | 7/11 | 52/63 | 0.6 |
Age (years) | 37.8 ± 15.8 | 34.6 ± 13 | 0.4 |
WBC counts (/μl*103) | 61.3 ± 9.9 | 65.5 ± 12.2 | 0.4 |
Hb (g/dl) | 1.7 ± 8 | 2.6 ± 9 | 0.1 |
Platelets (/μl*103) | 53.4 ± 45 | 57.2 ± 76 | 0.2 |
Electrophoresis and sequencing results
Distribution of genotype and allele frequency
APL Patients | controls | |||||||
---|---|---|---|---|---|---|---|---|
SNP ID | Genotype (N) | Genotype Frequency (%) | Allele (N) | Allele Frequency (%) | Genotype | Genotype Frequency (%) | Allele (N) | Allele Frequency (%) |
rs5498 | AA (39) | 29 | A (150) | 56 | AA | 30 | A (112) | 56 |
AG (72) | 54 | G (116) | 44 | AG | 52 | G (88) | 44 | |
GG (22) | 17 | GG | 18 | |||||
rs4811528 | AA(50) | 37 | A (158) | 59 | AA | 48 | A (137) | 68 |
AG (58) | 44 | G (108) | 41 | AG | 41 | G (63) | 32 | |
GG (25) | 19 | GG | 11 | |||||
rs7270785 | TT (38) | 29 | T (148) | 56 | TT | 25 | T (108) | 54 |
TG (72) | 54 | G (118) | 44 | TG | 58 | G (92) | 46 | |
GG (23) | 17 | GG | 17 | |||||
rs1024611 | TT (61) | 46 | T (181) | 68 | TT | 54 | T (144) | 72 |
TC (59) | 44 | C (85) | 32 | TC | 36 | C (56) | 28 | |
CC (13) | 10 | CC | 10 |
Correlation of ICAM-1, CCL2 and TGM2 polymorphisms with differentiation syndrome in APL patients
Model | Genotype | DS (%) | No DS (%) | OR (95% CI) | P-value | AIC | BIC |
---|---|---|---|---|---|---|---|
Codominant | A/A | 13 (72.2) | 37 (32.2) | 1.00 | 0.0096 | 90.2 | 104.7 |
A/G | 4 (22.2) | 54 (47) | 5.61 (1.53–20.48) | ||||
G/G | 1 (5.6) | 24 (20.9) | 6.14 (0.70–53.45) | ||||
Dominant | A/A | 13 (72.2) | 37 (32.2) | 1.00 | 0.0023 | 88.2 | 99.8 |
A/G-G/G | 5 (27.8) | 78 (67.8) | 5.72 (1.74–18.81) | ||||
Recessive | A/A-A/G | 17 (94.4) | 91 (79.1) | 1.00 | 0.24 | 96.2 | 107.7 |
G/G | 1 (5.6) | 24 (20.9) | 3.03 (0.36–25.25) | ||||
Over dominant | A/A-G/G | 14 (77.8) | 61 (53) | 1.00 | 0.02 | 92.1 | 103.6 |
A/G | 4 (22.2) | 54 (47) | 4.06 (1.14–14.44) | ||||
Log-additive | – | – | – | 3.78 (1.37–10.44) | 0.004 | 89.2 | 100.8 |
rs7270785 | rs4811528 | Frequency | OR (95% CI) | P-value |
---|---|---|---|---|
T | A | 0.43 | 1.00 | 0.033 |
G | G | 0.27 | 3.96 (1.13–13.86) | |
G | A | 0.17 | 1.47 (0.55–3.95) | 0.45 |
T | G | 0.13 | 6.06 (0.67–54.75) | 0.11 |