Background
Methods
Subjects
Genotyping
Statistical analysis
Results
SNP | Allele/genotype | Allele frequency | OR (95% CI) | Fisher's Exact P-Value | Hardy-Weinberg's Exact P-Value | ||
---|---|---|---|---|---|---|---|
Shagia , n (%) | Manasir , n (%) |
Shagia
|
Manasir
| ||||
T-33C
|
T/C
|
33/219 (13.1/86,9)
|
40/142 (22/78)
| 0.53 (0.32-0.,88) |
0.02
| ||
TT | 4 (3.2) | 6 (6.6) |
0.01
| 0.22 | 0.36 | ||
TC | 25 (19.8) | 28 (30.8) | |||||
CC | 97 (77) | 57 (62.6) | |||||
G125A
|
G/A
|
235/17 (93,2/6,8)
|
169/13 (92.9/7.1)
| 1.06 (0.5-2.25) | > 0.9 | ||
GG | 3 (2.4) | 1 (1.1) | 0.58 |
0.01
| 0.37 | ||
GA | 11 (8.7) | 11 (12.1) | |||||
AA | 112 (88.9) | 79 (86.8) | |||||
G298A
|
G/A
|
162/90(64,3/35,7)
|
101/81 (55.5/44.5)
| 1.44 (0.97-2.13) | 0.07 | ||
GG | 36 (28.6) | 10 (11) |
0.002
|
< 0.00
|
< 0.00
| ||
GA | 90 (71.4) | 81 (89) | |||||
AA | 0 (0) | 0 (0) | |||||
C5411T
|
C/T
|
136/116 (54/46)
|
95/87 (52.2/47.8)
| 1.07 (0.73-1.57) | 0.8 | ||
CC
| 10 (7.9) | 4 (4.4) | 0.46 |
< 0.00
|
< 0.00
| ||
CT
| 116 (92.1) | 87 (95.6) | |||||
TT
| 0 (0) | 0 (0) |
Haplotype | Haplotype frequency | Overall haplotype frequency | HAP-Score | Overall P-Value | |
---|---|---|---|---|---|
Shagia
|
Monassir
| ||||
CA
| 0,83 | 0,77 | 0,80 | -1,59 | 0,11 |
CG
| 0,04 | 0,01 | 0,03 | -1,26 | 0,21 |
TG
| 0,29 | 0,06 | 0,04 | 1,36 | 0,17 |
TA
| 0,10 | 0,16 | 0,13 | 1,85 | 0,06 |
Genotype combinations | Shagia, n (%) | Manasir, n (%) | Fisher's Exact P-Value | GATA genotype according T-33C | Deduced genotype according G125A | Predicted genotype | Predicted phenotype | |||
---|---|---|---|---|---|---|---|---|---|---|
T-33C
|
G125A
|
G298A
|
C5411T
| |||||||
TT
|
AA
|
GA
|
CT
| 1 (0,8) | 4 (4,4) | 0,16 |
GATA+
|
FY*B/FY*B
|
FY*B/FY*B
| Fy (a-, b+) |
TT
|
AA
|
GG
|
CT
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA+
|
FY*B/FY*B
|
FY*B/FY*B
| Fy (a-, b+) |
TT
|
GA
|
GG
|
CT
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA+
|
FY*A/FY*B
|
FY*A/FY*B
| Fy (a+, b+) |
TT
|
GA
|
GA
|
CT
| 0 (0,0) | 2 (2,2) | 0,17 |
GATA+
|
FY*A/FY*B
|
FY*A/FY*B
| Fy (a+, b+) |
TT
|
GG
|
GG
|
CT
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA+
|
FY*A/FY*A
|
FY*A/FY*A
| Fy (a+, b-) |
TC
|
AA
|
GG
|
CC
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA+/-
|
FY*B/FY*B
|
FY*B/FY*B
| Fy (a-, b+) |
TC
|
AA
|
GA
|
CT
| 17 (13,5) | 16 (17,6) | 0,45 |
GATA+/-
|
FY*B/FY*B
|
FY*B/FY*B
| Fy (a-, b+) |
TC
|
AA
|
GG
|
CT
| 2 (1,6) | 3 (3,3) | 0,65 |
GATA+/-
|
FY*B/FY*B
|
FY*B/FY*B
| Fy (a-, b+) |
TC
|
GA
|
GA
|
CT
| 4 (3,2) | 7 (7,7) | 0,21 |
GATA+/-
|
FY*A/FY*B
|
FY*A
ES
/FY*B or FY*A/FY*B
ES
| Fy (a+, b-) or Fy (a-, b+) |
TC
|
GA
|
GG
|
CT
| 1 (0,8) | 1 (1,1) | ≥ 0,99 |
GATA+/-
|
FY*A/FY*B
|
FY*A
ES
/FY*B or FY*A/FY*B
ES
| Fy (a+, b-) or Fy (a-, b+) |
TC
|
GG
|
GA
|
CT
| 0 (0,0) | 1 (1,1) | 0,41 |
GATA+/-
|
FY*A/FY*A
|
FY*A/FY*A
ES
or FY*A
ES
/FY*A
| Fy (a+, b-) |
CC
|
AA
|
GG
|
CC
| 4 (3,2) | 0 (0,0) | 0,14 |
GATA-
|
FY*B/FY*B
|
FY*B
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
AA
|
GA
|
CC
| 2 (1,6) | 4 (4,4) | 0,24 |
GATA-
|
FY*B/FY*B
|
FY*B
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
AA
|
GG
|
CT
| 20 (45,9) | 6 (6,6) |
≤ 0,001
|
GATA-
|
FY*B/FY*B
|
FY*B
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
AA
|
GA
|
CT
| 64 (50,8) | 46 (50,6) | ≥ 0,99 |
GATA-
|
FY*B/FY*B
|
FY*B
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
GA
|
GG
|
CC
| 2 (1,6) | 0 (0,0) | 0,51 |
GATA-
|
FY*A/FY*B
|
FY*A
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
GA
|
GG
|
CT
| 2 (1,6) | 0 (0,0) | 0,51 |
GATA-
|
FY*A/FY*B
|
FY*A
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
GA
|
GA
|
CT
| 1 (0,8) | 1 (1,1) | ≥ 0,99 |
GATA-
|
FY*A/FY*B
|
FY*A
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
GG
|
GG
|
CC
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA-
|
FY*A/FY*B
|
FY*A
ES
/FY*B
ES
| Fy (a-, b-) |
CC
|
GG
|
GA
|
CT
| 1 (0,8) | 0 (0,0) | ≥ 0,99 |
GATA-
|
FY*A/FY*B
|
FY*A
ES
/FY*B
ES
| Fy (a-, b-) |