Background
Methods
Study sites
Study Sites (Code number) | Coordinates | Elevation (m ASL) |
---|---|---|
Highlands | ||
Taptap (S1) | N 10.42619°; E 123.8442° | 719 |
Babag– 1 (S2) | N 10.36876°; E 123.8601° | 617 |
Babag– 2 (S3) | N 10.37282°; E 123.8459° | 405 |
Lowlands | ||
Bacayan (S4) | N 10.38690°; E 123.91910° | 83 |
Pit-os (S5) | N 10.40160°; E 123.91910° | 83 |
Talamban (S6) | N 10.35373°; E 123.91264° | 65 |
Mosquito collections
Rearing of collected Aedes eggs and sub-adults
Sample size
RNA extraction
Detection of CHIKV, DENV, and ZIKV
Reverse transcription-polymerase chain reaction (RT-PCR)
CHIKV PCR
Nested PCR of CHIKV
DENV PCR
Serotyping of DENVs
ZIKV PCR
PCR product purification and sequencing of positive controls
Arbovirus | Expected band size (bp) | Aedes species | Site of Origin | Date of Collection |
---|---|---|---|---|
CHIKV | 200 (49) | Ae. albopictus | Talamban (S6) | August 2021 |
DENV (consensus) | 511 (50) | Ae. aegypti | Liloan, Cebu | August 2021 |
DENV-1 | 482 (50) | Ae. aegypti | Liloan, Cebu | August 2021 |
DENV-2 | 119 (50) | Ae. albopictus | Talamban (S6) | November 2021 |
DENV-3 | 290 (50) | Ae. aegypti | Liloan, Cebu | October 2021 |
DENV-4 | 392 (50) | Ae. aegypti | Liloan, Cebu | November 2021 |
ZIKV | 192 (51) | Ae. albopictus | Taptap (S1) | August 2021 |
Weather data
Data and statistical analyses
Weather Condition | Low | Moderate | High |
---|---|---|---|
RH | 74–76% | 77–78% | 79–80% |
RF | < 120 mm | 120–150 mm | > 150 mm |
Temperature | 27 °C | 28 °C | 29 °C |
Results
Isolation of CHIKV, DENVs, and ZIKV in Ae. albopictus as positive controls
MIRs of CHIKV in Ae. albopictus by season and altitude
Season and Sites | na | MIRs (w/ number of positive poolsb) | |||||
---|---|---|---|---|---|---|---|
CHIKV | DENV-1 | DENV-2 | DENV-3 | DENV-4 | ZIKV | ||
Dry Season | |||||||
Highland | |||||||
Taptap (S1) | 358 | 33.52 (12) | 0.00 (0) | 0.00 (0) | 2.79 (1) | 5.59 (2) | 27.93 (10) |
Babag 1 (S2) | 326 | 18.40 (6) | 3.07 (1) | 3.07 (1) | 6.13 (2) | 6.13 (2) | 36.82 (12) |
Babag 2 (S3) | 338 | 32.54 (11) | 2.96 (1) | 5.92 (2) | 8.88 (3) | 2.96 (1) | 17.75 (6) |
Lowland | |||||||
Bacayan (S4) | 384 | 15.63 (6) | 7.81 (3) | 2.60 (1) | 13.02 (5) | 15.63 (6) | 31.25 (12) |
Pit-os (S5) | 319 | 34.48 (11) | 0.00 (0) | 0.00 (0) | 9.40 (3) | 3.13 (1) | 18.81 (6) |
Talamban (S6) | 274 | 47.45 (13) | 7.30 (2) | 0.00 (0) | 3.65 (1) | 0.00 (0) | 18.25 (5) |
Wet Season | |||||||
Highland | |||||||
Taptap (S1) | 313 | 51.12 (16) | 0.00 (0) | 0.00 (0) | 12.78 (4) | 0.00 (0) | 31.95 (10) |
Babag 1 (S2) | 312 | 48.08 (15) | 3.21 (1) | 0.00 (0) | 0.00 (0) | 0.00 (0) | 32.05 (10) |
Babag 2 (S3) | 335 | 47.76 (16) | 2.99 (1) | 0.00 (0) | 0.00 (0) | 0.00 (0) | 17.91 (6) |
Lowland | |||||||
Bacayan (S4) | 475 | 40.00 (19) | 4.21 (2) | 0.00 (0) | 4.21 (2) | 0.00 (0) | 27.37 (13) |
Pit-os (S5) | 345 | 57.97 (20) | 8.70 (3) | 0.00 (0) | 2.90 (1) | 2.90 (1) | 20.29 (7) |
Talamban (S6) | 311 | 51.45 (16) | 3.22 (1) | 0.00 (0) | 6.43 (2) | 0.00 (0) | 25.72 (8) |
Category | Kruskal-Wallis H | df | P-value |
---|---|---|---|
By season | |||
CHIKV | 14.814 | 1 | 0.000* |
DENV-1 | 0.119 | 1 | 0.730 |
DENV-2 | 4.097 | 1 | 0.043* |
DENV-3 | 2.894 | 1 | 0.093 |
DENV-4 | 11.928 | 1 | 0.001* |
ZIKV | 1.377 | 1 | 0.241 |
By altitude | |||
CHIKV | 0.007 | 1 | 0.932 |
DENV-1 | 1.960 | 1 | 0.162 |
DENV-2 | 0.341 | 1 | 0.559 |
DENV-3 | 0.018 | 1 | 0.892 |
DENV-4 | 0.108 | 1 | 0.743 |
ZIKV | 0.000 | 1 | 0.993 |
MIRs of DENVs in Ae. albopictus by season and altitude
MIRs of DENVs in Ae. albopictus and dengue cases in Cebu city
MIRs of ZIKV in Ae. albopictus by season and altitude
Description of the seasonal weather data
Season | Month | RH (%) | RF (mm) | Temperature (ºC) |
---|---|---|---|---|
Dry Season 2021 | March | 77.00 | 90.20 | 28.35 |
April | 74.00 | 52.00 | 28.60 | |
May | 78.00 | 120.60 | 29.40 | |
Mean | 76.33 | 87.60 | 28.78 | |
Wet Season 2021 | June | 80.00 | 226.20 | 28.75 |
July | 75.00 | 130.50 | 29.30 | |
August | 78.00 | 143.60 | 28.96 | |
September | 80.00 | 124.60 | 28.60 | |
October | 79.00 | 203.00 | 28.44 | |
November | 79.00 | 146.50 | 28.76 | |
Mean | 78.50 | 162.40 | 28.80 | |
Dry Season 2022 | March | 79.00 | 102.40 | 28.31 |
April | 80.00 | 368.20 | 27.84 | |
May | 78.00 | 69.80 | 29.12 | |
Mean | 79.00 | 180.13 | 28.42 | |
Wet Season 2022 | February | 79.00 | 60.10 | 27.80 |
June | 75.00 | 179.30 | 28.62 | |
Mean | 77.00 | 119.70 | 28.21 |
Relationship between the MIRs of CHIKV in Ae. albopictus and the weather
Category | Kruskal-Wallis H | df | P-value |
---|---|---|---|
By RH | |||
CHIKV | 4.489 | 2 | 0.106 |
DENV-1 | 0.885 | 2 | 0.244 |
DENV-2 | 3.073 | 2 | 0.215 |
DENV-3 | 4.087 | 2 | 0.130 |
DENV-4 | 2.622 | 2 | 0.270 |
ZIKV | 18.106 | 2 | 0.000* |
By RF | |||
CHIKV | 8.537 | 2 | 0.014* |
DENV-1 | 1.422 | 2 | 0.491 |
DENV-2 | 5.531 | 2 | 0.063 |
DENV-3 | 0.382 | 2 | 0.826 |
DENV-4 | 1.503 | 2 | 0.472 |
ZIKV | 1.630 | 2 | 0.443 |
By temperature | |||
CHIKV | 3.560 | 2 | 0.169 |
DENV-1 | 3.426 | 2 | 0.180 |
DENV-2 | 1.707 | 2 | 0.426 |
DENV-3 | 0.279 | 2 | 0.870 |
DENV-4 | 4.815 | 2 | 0.090 |
ZIKV | 7.067 | 2 | 0.029* |