Introduction
Material and Methods
Finding related genes and construction of genetic network
Gene Ontology and pathway enrichment analysis
Prediction of transcription factors and microRNAs besides drug repurposing
Results
Identification of SCZ-OCD shared genes and finding hub genes from reconstructed genetic network
Gene Ontology and pathway analysis for common genes
Name | q-value FDR B&H | Involved Genes |
---|---|---|
GO: Molecular Functions | ||
Neurotransmitter receptor activity | 8.42E-27 | GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4,HTR1B,HTR2A,HTR3A,HTR7,HTR3E, GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,GRM5,GABBR1,GABRA1 |
Transmitter-gated ion channel activity | 6.02E-15 | GABRG2,HTR3A,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,GABRA1 |
Signaling receptor activity | 6.02E-15 | GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4,HTR1B,NRXN3,HTR2A,OXTR, HTR3A,NRXN1,HTR7,NTRK1,NTRK2,ESR1,HLA-DRB1,NTRK3,ESR2,NPSR1, HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,NR3C1,GRM5, FAS,NPY,GABBR1,GABRA1,OPRM1 |
Molecular transducer activity | 6.02E-15 | GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4,HTR1B,NRXN3,HTR2A,OXTR, HTR3A,NRXN1,HTR7,NTRK1,NTRK2,ESR1,HLA-DRB1,NTRK3,ESR2,NPSR1,HTR3E, GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,NR3C1, GRM5,FAS,NPY,GABBR1,GABRA1,OPRM1 |
Postsynaptic neurotransmitter receptor activity | 6.02E-15 | GABRG2,DRD1,DRD2,DRD3,DRD4,GRIA2,GRIA3,GRIK2,GRIK3,GRIN2B, GRM5,GABBR1,GABRA1 |
Transmembrane signaling receptor activity | 8.26E-14 | GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4,HTR1B,HTR2A,OXTR,HTR3A, NRXN1,HTR7,NTRK1,NTRK2,HLA-DRB1,NTRK3,NPSR1,HTR3E,GRIA2, GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,GRM5, FAS,NPY,GABBR1,GABRA1,OPRM1 |
Glutamate binding | 2.09E-12 | GAD1,GAD2,GRIA2,GRIA3,GRIK2,GRIK3,GRIN2B,GRM5,SLC1A1 |
Ligand-gated ion channel activity | 6.77E-12 | GABRG2,HTR3A,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3, GRIN2B,HTR3B,GABRA1 |
Dopamine binding | 8.19E-12 | SLC6A3,TH,DRD1,DRD2,DRD3,DRD4 |
Transmembrane transporter activity | 8.19E-12 | SLC6A3,SLC6A4,GABRG2,DRD4,HTR1B,NRXN3,HTR3A,NRXN1,SLC18A1,SLC18A2,KCNH2,UCP2, HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,SLC1A1,SLC1A2,NPY,GABRA1, ABCB1,OPRM1,KCNH5 |
Passive transmembrane transporter activity | 8.19E-12 | GABRG2,DRD4,HTR1B,NRXN3,HTR3A,NRXN1,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D, GRIK2,GRIK3,GRIN2B,HTR3B,SLC1A1,NPY,GABRA1,OPRM1,KCNH5 |
Serotonin-gated cation-selective channel activity | 5.90E-11 | HTR3A,HTR3E,HTR3C,HTR3D,HTR3B |
Inorganic molecular entity transmembrane transporter activity | 6.33E-11 | SLC6A3,SLC6A4,GABRG2,DRD4,HTR1B,HTR3A,SLC18A1,SLC18A2,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C, HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,SLC1A1,SLC1A2,GABRA1,ABCB1,OPRM1,KCNH5 |
Ligand-gated cation channel activity | 1.04E-10 | HTR3A,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B |
Monooxygenase activity | 1.09E-10 | TH,CYP2C19,CYP2D6,CYP2E1,CYP3A4,CYP3A5,ESR1,TPH2,AKT1,DBH,TPH1 |
serotonin binding | 1.18E-10 | SLC6A4,HTR1A,DRD4,HTR1B,HTR2A,HTR3A,MAOA,HTR7 |
Amine binding | 1.71E-10 | SLC6A4,HTR1A,DRD4,HTR1B,HTR2A,HTR3A,MAOA,HTR7 |
Cation transmembrane transporter activity | 1.74E-10 | SLC6A3,SLC6A4,DRD4,HTR1B,HTR3A,SLC18A1,SLC18A2,KCNH2,HTR3E,GRIA2, GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,SLC1A1,SLC1A2,OPRM1,KCNH5 |
Amino acid binding | 2.37E-10 | GAD1,GAD2,TH,GRIA2,GRIA3,GRIK2,GRIK3,GRIN2B,GRM5,SLC1A1 |
Ion channel activity | 3.41E-10 | GABRG2,DRD4,HTR1B,HTR3A,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3, GRIN2B,HTR3B,SLC1A1,GABRA1,OPRM1,KCNH5 |
Catecholamine binding | 4.35E-10 | SLC6A3,TH,DRD1,DRD2,DRD3,DRD4 |
Ion transmembrane Transporter activity | 4.95E-10 | SLC6A3,SLC6A4,GABRG2,DRD4,HTR1B,HTR3A,SLC18A1,SLC18A2,KCNH2,HTR3E,GRIA2, GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,SLC1A1,SLC1A2,GABRA1,ABCB1,OPRM1,KCNH5 |
Neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential | 2.58E-09 | GABRG2,GRIA2,GRIA3,GRIK2,GRIK3,GRIN2B,GABBR1,GABRA1 |
Cation channel activity | 9.12E-09 | DRD4,HTR1B,HTR3A,KCNH2,HTR3E,GRIA2,GRIA3,HTR3C,HTR3D,GRIK2,GRIK3,GRIN2B,HTR3B,OPRM1,KCNH5 |
Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 9.29E-09 | TH,CYP2C19,CYP2D6,CYP2E1,CYP3A4,CYP3A5,ESR1,TPH2,AKT1,DBH,TPH1 |
Dopamine neurotransmitter receptor activity | 3.34E-08 | DRD1,DRD2,DRD3,DRD4 |
Glutamate receptor activity | 3.39E-08 | GRIA2,GRIA3,GRIK2,GRIK3,GRIN2B,GRM5 |
GO: Cellular Components | ||
Neuron projection | 1.89E-38 | SLC6A3,SLC6A4,GABRG2,GAD1,GAD2,TH,DRD1,DRD2,HTR1A,DRD4,HTR1B,HTR2A,HTR3A,COMT,NRCAM,NRXN1, HTR7,MAP2,SLC18A1,MTOR,SLC18A2,NTRK1,NTRK2,ESR1,NTRK3,ESR2,HTR3E,TPH2,CNTNAP2,ARC,SYP, GRIA2, GRIA3,DLG4,HTR3C,HTR3D,GRIK2,GRIK3,DBH,GRIN2B,HTR3B,CTNNB1,NR3C1,GRM5,FAS,CREB1, SLC1A1, SLC1A2, AR,HOMER1,CRH,BDNF,NPY,GABBR1,SOD1,GABRA1,OPRM1,TPH1 |
Synapse | 6.03E-35 | SLC6A3,SLC6A4,GABRG2,GAD1,GAD2,TH,DRD1,DRD2,DRD3,HTR1A,DRD4,HTR1B,NRXN3,HTR2A,HTR3A, COMT,NRCAM,NRXN1,HTR7,MAP2,SLC18A1,MTOR,SLC18A2,NTRK2,ESR1,NTRK3,HTR3E,CNTNAP2, ARC,SYP,GRIA2,GRIA3,DLG4,HTR3C,HTR3D,AKT1,GRIK2,GRIK3,DBH,GRIN2B,HTR3B,CTNNB1,NR3C1,GRM5, SLC1A1,SLC1A2,HOMER1,CRH,BDNF,NPY,GABBR1,NOS1AP,GABRA1,OPRM1 |
Somatodendritic compartment | 1.10E-30 | SLC6A3,GABRG2,TH,DRD1,DRD2,HTR1A,DRD4,HTR1B,HTR2A, HTR3A,COMT,NRXN1,HTR7,MAP2, MTOR,SLC18A2,NTRK1, NTRK2,ESR1,ESR2,CNTNAP2,ARC,GRIA2,GRIA3,DLG4,GRIK2, GRIK3,DBH,GRIN2B,HTR3B,CTNNB1,NR3C1,GRM5,FAS,SLC1A1,SLC1A2,AR,HOMER1,CRH,BDNF,NPY, GABBR1,SOD1,GABRA1,OPRM1 |
Neuronal cell body | 1.85E-25 | SLC6A3,TH,DRD1,DRD2,HTR1A,DRD4,HTR2A,HTR3A,NRXN1,HTR7, MAP2,MTOR,SLC18A2,NTRK1,NTRK2,ESR1, ESR2, CNTNAP2,ARC,GRIA2,GRIA3,GRIK2,GRIK3, DBH,GRIN2B,HTR3B,FAS,SLC1A1, HOMER1,CRH, BDNF,NPY,GABBR1,SOD1,OPRM1 |
Dendritic tree | 2.07E-25 | GABRG2,TH,DRD1,DRD2,HTR1A,DRD4,HTR1B,HTR2A,COMT,HTR7, MAP2,MTOR,NTRK1,NTRK2,CNTNAP2, ARC,GRIA2,GRIA3,DLG4, GRIK2,GRIK3,DBH,GRIN2B,CTNNB1,NR3C1,GRM5,FAS,SLC1A1, SLC1A2,AR,HOMER1,BDNF,GABBR1,SOD1,GABRA1,OPRM1 |
Intrinsic component of synaptic membrane | 1.23E-24 | SLC6A3,SLC6A4,GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4, HTR1B,HTR2A,HTR3A,NRCAM,NRXN1, HTR7,NTRK3,GRIA2,GRIA3,DLG4,GRIN2B,GRM5,SLC1A2,GABBR1,GABRA1,OPRM1 |
glutamatergic synapse | 2.06E-18 | GABRG2,DRD1,DRD2,DRD3,DRD4,HTR2A,HTR3A,NRCAM,NRXN1, MTOR,NTRK2,NTRK3,ARC,GRIA2,GRIA3, DLG4,GRIK2,GRIK3, GRIN2B,NR3C1,GRM5,SLC1A2,HOMER1,GABBR1,NOS1AP |
Neuron spine | 5.57E-18 | DRD1,DRD2,DRD4,COMT,NTRK2,CNTNAP2,ARC,SYP,GRIA2, GRIA3,DLG4,GRIK2,GRIN2B, NR3C1,GRM5,SLC1A1,SLC1A2, HOMER1,GABBR1,OPRM1 |
Distal axon | 2.31E-17 | GAD1,TH,DRD1,DRD2,DRD4,HTR1B,NRXN1,HTR7,MAP2,SLC18A1, SLC18A2,NTRK2,ESR1,SYP, GRIA2,GRIA3,GRIK2,GRIK3, DBH,GRIN2B,SLC1A1,BDNF,NPY |
Terminal bouton | 4.14E-16 | TH,DRD4,SLC18A1,SLC18A2,NTRK2,ESR1,SYP,GRIA2, GRIA3,GRIK2,GRIK3,DBH, GRIN2B,BDNF,NPY |
Dendritic spine | 1.68E-15 | DRD1,DRD2,DRD4,COMT,NTRK2,ARC,GRIA2,GRIA3,DLG4,GRIK2,GRIN2B,NR3C1,GRM5,SLC1A1,SLC1A2, HOMER1,GABBR1,OPRM1 |
Dendritic shaft | 1.46E-13 | DRD1,HTR2A,MAP2,GRIA2,GRIA3,CTNNB1,GRM5,SLC1A1,SLC1A2,HOMER1,GABBR1 |
Perikaryon | 2.04E-13 | TH,DRD2,NTRK2,ESR1,ESR2,CNTNAP2,GRIA2,GRIA3,GRIK2, GRIK3,SLC1A1,CRH,BDNF,NPY,OPRM1 |
Asymmetric synapse | 6.82E-12 | DRD1,DRD2,DRD3,NRCAM,MAP2,NTRK2,ARC,SYP, GRIA2,GRIA3,DLG4,GRIK2,GRIN2B,CTNNB1, NR3C1,GRM5,SLC1A1,HOMER1 |
Neuron to neuron synapse | 1.87E-11 | DRD1,DRD2,DRD3,NRCAM,MAP2,NTRK2,ARC,SYP,GRIA2, GRIA3,DLG4,GRIK2,GRIN2B,CTNNB1, NR3C1,GRM5,SLC1A1,HOMER1 |
Receptor complex | 3.58E-10 | GABRG2,HTR1B,HTR2A,HTR3A,NTRK1,NTRK2,NTRK3,GRIA2,GRIA3,DLG4,GRIK2,GRIK3, GRIN2B,HTR3B, GDNF,IL6,GABBR1,GABRA1 |
GABA-ergic synapse | 5.15E-10 | GABRG2,DRD1,DRD2,DRD3,HTR1A,DRD4,NRXN3,NRXN1,GABBR1,GABRA1 |
Predicted transcription factors and microRNAs for target genes
Name | P-value | Involved Genes |
---|---|---|
HMGA1 | 0.0001071 | GRIA2, GABRA1, ABCB1, BDNF, NRXN1, GSTP1, NRXN3, HTR3D, HTR3A, PRL,OPRM1,NR3C1, RGS4, NOS1AP, UCP2,DRD2,GRIA3 |
MAPK14 | 0.0002271 | GABRA1, KCNH5, SLC1A1, OPRM1, NR3C1, ESR1, RGS4,AR, NOS1AP,CRH, DRD1, ANKK1, SLC18A1, DRD3,SLC18A2 |
HINFP | 0.0002323 | CNTNAP2, MAOB, COMT, NR3C1, SLC6A3, RGS4, AKT1, NRCAM, DRD2,SLC18A2, KCNH2, NTRK1,NTRK2,EGR1,GABRA1,BDNF,NTRK3,OLIG2,OPRM1,HTR3B,ESR1,AR, ARC,NOS1AP,CRH,CYP2E1,HLA-DRB1 |
TEAD2 | 0.0007907 | HOMER1, BDNF, NTRK3, GRIK3, HTR2A,COMT, NR3C1, SLC6A3, LMX1A,TH, GDNF, DLG4, UCP2, CTNNB1, ANKK1, SLC18A2, |
JUND | 0.001069 | GRIA2, GABRA1, MAOB, BDNF, NRXN1, NRXN3, PRL,NR3C1, CYP3A5,GABRG2, HTR7, NPY, CRH, NRCAM, SLC18A1 |
NFIA | 0.001384 | MAOB, PRL,NR3C1, CYP3A4, ESR1, ESR2, SOD1, AR, GRM5, LMX1A, TH, CYP2D6, DLG4, CYP2E1, DRD3 |
SAMD9L | 0.003779 | KCNH2, NPSR1,TPH2,GRIA2,EGR1,MOG,HTR3D, GAD2, HTR3A,NR3C1,CYP3A5,ESR1,DRD1,DRD3 |
NFKB1 | 0.004332 | GSTP1, SLC1A1,NRXN3,COMT, SLC6A3, SLC6A4, AKT1, EGR1, EGR2, KCNH5, BDNF, NTRK3, GAD1, GAD2, OPRM1, GRIN2B, ESR1, GABRG2, MTOR, ESR2,ARC,IL6, CREB1, GDNF, NOS1AP,ANKK1 |
REL | 0.00493 | KCNH5, LMX1A, BDNF, NTRK3,PRL,SLC6A4 |
PRDM1 | 0.005229 | NTRK2, GABRA1, BDNF, NFKBIL1, NRXN1, NRXN3, DBH, OPRM1, COMT, NR3C1, RGS4, CREB1, GDNF, HLA-DRB1 |
HOXA5 | 0.005306 | CNTNAP2, GRIA2, GABRA1, GABBR1, EGR2, MAOB, BDNF, SLC1A1, SLC1A2,NRXN3, HTR1A, HTR3D, GAD2, HTR3A, OLIG2, OPRM1, COMT, NR3C1, SLC6A3, GDNF, MAP2, NRCAM, DRD3 |
GATA1 | 0.006189 | NPSR1, NTRK2, EGR1, ABCB1, BDNF, NRXN3, PRL, OPRM1, SYP, CYP3A4, ESR1, RGS4, GRM5, HTR7, MAP2, DLG4, NPY, CRH, FAS, DRD3, SLC18A2 |
NKX3-1 | 0.006509 | KCNH5, NRXN3, ESR1, MTOR |
VDR | 0.007118 | BDNF, CYP3A4, CYP3A5 |
STAT3 | 0.008629 | GRIA2, TPH1, GABBR1, EGR2, ABCB1, MOG, BDNF, NFKBIL1, NTRK3, GAD1, DBH, OPRM1, CYP3A5, ESR1, SLC6A4, RGS4, AR, IL6, MAP2, NRCAM, HLA-DRB1 |