Background
Materials and methods
Subjects
Genomic DNA extraction and genotyping
Statistical analysis
Results
Variables | DN patients (n = 660) | Normal controls (n = 665) | p-values |
---|---|---|---|
Age (year), mean ± SD | 65.8 ± 13.8 | 66.3 ± 14.3 | 0.517 |
Gender, N (%) | 0.652 | ||
Males, N (%) | 378 (57.3) | 389 (58.5) | |
Females, N (%) | 282 (42.7) | 276 (41.5) | |
Hypertension, N (%) | 238 (36.1) | 195 (29.3) | 0.009 |
BMI (kg/m2), mean ± SD | 24.3 ± 8.4 | 23.7 ± 8.1 | 0.186 |
Smoking, N (%) | 0.062 | ||
Never smoking | 435 (65.9) | 470 (70.7) | |
Ever or current smoking | 225 (34.1) | 195 (29.3) | |
Alcohol drinking, N (%) | 0.0033 | ||
Never drinking | 408 (61.8) | 462 (69.5) | |
Ever or current drinking | 252 (38.2) | 203 (30.5) | |
FPG (mmol/l) | 9.3 ± 3.9 | 9.1 ± 3.7 | 0.338 |
HbA1c (%) | 8.57 ± 3.23 | 8.28 ± 3.25 | 0.029 |
Duration of diabetes | 10.1 ± 4.4 | 9.8 ± 4.7 | 0.231 |
Creatinine (mg/dl) | 1.24 ± 0.37 | 1.12 ± 0.29 | < 0.001 |
Urea (mg/dl) | 40.5 ± 15.1 | 35.3 ± 14.3 | < 0.001 |
ACR (μg/mg) | 82.34 ± 33.8 | 22.8 ± 7.6 | < 0.001 |
SNPs | Genotypes or alleles | Frequencies N (%) | OR (95% CI)a | p-values | p-values for HWE test in controls | |
---|---|---|---|---|---|---|
Normal controls (n = 665) | DN patients (n = 660) | |||||
rs741301 | AA genotype | 430 (64.7) | 325 (49.2) | 1.00 (ref) | 0.148 | |
AG genotype | 202 (30.4) | 265 (40.2) | 1.68 (1.15–2.23) | < 0.001 | ||
GG genotype | 33 (5.0) | 70 (10.6) | 2.04 (1.29–2.82) | < 0.001 | ||
A allele | 1062 (79.8) | 915 (69.3) | 1.00 (ref) | |||
G allele | 268 (20.2) | 405 (30.7) | 1.75 (1.19–2.28) | < 0.001 | ||
rs1345365 | AA genotype | 415 (62.4) | 382 (57.9) | 1.00 (ref) | 0.228 | |
AG genotype | 214 (32.2) | 235 (35.6) | 1.20 (0.80–1.81) | 0.462 | ||
GG genotype | 36 (5.4) | 43 (6.5) | 1.51 (0.69–2.32) | 0.613 | ||
A allele | 1044 (78.5) | 999 (75.7) | 1.00 (ref) | |||
G allele | 286 (21.5) | 321 (24.3) | 1.24 (0.77–1.95) | 0.529 | ||
rs10255208 | AA genotype | 426 (64.1) | 351 (53.2) | 1.00 (ref) | 0.294 | |
AG genotype | 207 (31.1) | 245 (37.1) | 1.28 (0.88–1.77) | 0.425 | ||
GG genotype | 32 (4.8) | 64 (9.7) | 1.90 (1.30–2.59) | < 0.001 | ||
A allele | 1059 (79.6) | 947 (71.7) | 1.00 (ref) | |||
G allele | 271 (20.4) | 373 (28.3) | 1.41 (1.06–1.92) | 0.021 | ||
rs7782979 | CC genotype | 409 (61.5) | 376 (57.0) | 1.00 (ref) | 0.592 | |
CA genotype | 228 (34.3) | 242 (36.7) | 1.20 (0.84–1.72) | 0.487 | ||
AA genotype | 28 (4.2) | 42 (6.4) | 1.29 (0.76–1.97) | 0.641 | ||
C allele | 1046 (78.6) | 994 (75.3) | 1.00 (ref) | |||
A allele | 284 (21.4) | 326 (24.7) | 1.23 (0.82–1.76) | 0.583 |
Locus no. | Best combination | Cross-validation consistency | Testing balanced accuracy | p-values* |
---|---|---|---|---|
Gene–hypertension interactionsa | ||||
2 | 1, hypertension | 8/10 | 0.598 | 0.6241 |
3 | 1, 3, hypertension | 6/10 | 0.562 | 0.377 |
4 | 1, 2, 3, hypertension | 5/10 | 0.545 | 0.857 |
5 | 1, 2, 3, 4, hypertension | 7/10 | 0.521 | 0.377 |
Gene–alcohol drinking interactionsb | ||||
2 | 1, alcohol drinking | 10/10 | 0.621 | 0.0107 |
3 | 1, 3, alcohol drinking | 8/10 | 0.599 | 0.1719 |
4 | 1, 2, 4, alcohol drinking | 7/10 | 0.558 | 0.3770 |
5 | 1, 2, 3, 4, alcohol drinking | 8/10 | 0.476 | 0.5316 |