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Erschienen in: Journal of Digital Imaging 2/2013

01.04.2013

Feature Selection in Computer-Aided Breast Cancer Diagnosis via Dynamic Contrast-Enhanced Magnetic Resonance Images

verfasst von: Megan Rakoczy, Donald McGaughey, Michael J. Korenberg, Jacob Levman, Anne L. Martel

Erschienen in: Journal of Imaging Informatics in Medicine | Ausgabe 2/2013

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Abstract

The accuracy of computer-aided diagnosis (CAD) for early detection and classification of breast cancer in dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is dependent upon the features used by the CAD classifier. Here, we show that fast orthogonal search (FOS), which provides a more efficient iterative manner of computing stepwise regression feature selection, can select features with predictive value from a set of kinetic and texture candidate features computed from dynamic contrast-enhanced magnetic resonance images. FOS can in minutes search candidate feature sets of millions of terms, which may include cross-products of features up to second-, third- or fourth-order. This method is tested on a set of 83 DCE-MRI images, of which 20 are for cancerous and 63 for benign cases, using a leave-one-out trial. The features selected by FOS were used in a FOS predictor and nearest-neighbour predictor and had an area under the receiver operating curve (AUC) of 0.889 and 0.791 respectively. The FOS predictor AUC is significantly improved over the signal enhancement ratio predictor with an AUC of 0.706 (p = 0.0035 for the difference in the AUCs). Moreover, using FOS-selected features in a support vector machine increased the AUC over that resulting when the features were manually selected.
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Literatur
1.
Zurück zum Zitat Nass SJ, Henderson IC, Lashof JC, National Cancer Policy Board (U.S.). Committee on Technologies for the Early Detection of Breast Cancer., National Cancer Policy Board (U.S.). Committee on the Early Detection of Breast Cancer: Mammography and beyond: Developing technologies for the early detection of breast cancer. National Academy Press, Washington, DC, 2001 Nass SJ, Henderson IC, Lashof JC, National Cancer Policy Board (U.S.). Committee on Technologies for the Early Detection of Breast Cancer., National Cancer Policy Board (U.S.). Committee on the Early Detection of Breast Cancer: Mammography and beyond: Developing technologies for the early detection of breast cancer. National Academy Press, Washington, DC, 2001
2.
Zurück zum Zitat Curry SJ, Byers T, Hewitt M: Fulfilling the potential of cancer prevention and early detection: National Academies Press, 1 edition. (May 21, 2003), 2003 Curry SJ, Byers T, Hewitt M: Fulfilling the potential of cancer prevention and early detection: National Academies Press, 1 edition. (May 21, 2003), 2003
3.
Zurück zum Zitat Warner E, Plewes DB, Hill KA, Causer PA, Zubovits JT, Jong RA, Cutrara MR, DeBoer G, Yaffe MJ, Messner SJ, Meschino WS, Piron CA, Narod SA: Surveillance of BRCA1 and BRCA2 mutation carriers with magnetic resonance imaging, ultrasound, mammography, and clinical breast examination. JAMA 292:1317–1325, 2004PubMedCrossRef Warner E, Plewes DB, Hill KA, Causer PA, Zubovits JT, Jong RA, Cutrara MR, DeBoer G, Yaffe MJ, Messner SJ, Meschino WS, Piron CA, Narod SA: Surveillance of BRCA1 and BRCA2 mutation carriers with magnetic resonance imaging, ultrasound, mammography, and clinical breast examination. JAMA 292:1317–1325, 2004PubMedCrossRef
4.
Zurück zum Zitat Leach MO, Boggis CR, Dixon AK, Easton DF, Eeles RA, Evans DG, Gilbert FJ, Griebsch I, Hoff RJ, Kessar P, Lakhani SR, Moss SM, Nerurkar A, Padhani AR, Pointon LJ, Thompson D, Warren RM: Screening with magnetic resonance imaging and mammography of a UK population at high familial risk of breast cancer: a prospective multicentre cohort study (MARIBS). Lancet 365:1769–1778, 2005PubMedCrossRef Leach MO, Boggis CR, Dixon AK, Easton DF, Eeles RA, Evans DG, Gilbert FJ, Griebsch I, Hoff RJ, Kessar P, Lakhani SR, Moss SM, Nerurkar A, Padhani AR, Pointon LJ, Thompson D, Warren RM: Screening with magnetic resonance imaging and mammography of a UK population at high familial risk of breast cancer: a prospective multicentre cohort study (MARIBS). Lancet 365:1769–1778, 2005PubMedCrossRef
5.
Zurück zum Zitat Kriege M, Brekelmans CT, Boetes C, Besnard PE, Zonderland HM, Obdeijn IM, Manoliu RA, Kok T, Peterse H, Tilanus-Linthorst MM, Muller SH, Meijer S, Oosterwijk JC, Beex LV, Tollenaar RA, de Koning HJ, Rutgers EJ, Klijn JG: Efficacy of MRI and mammography for breast-cancer screening in women with a familial or genetic predisposition. N Engl J Med 351:427–437, 2004PubMedCrossRef Kriege M, Brekelmans CT, Boetes C, Besnard PE, Zonderland HM, Obdeijn IM, Manoliu RA, Kok T, Peterse H, Tilanus-Linthorst MM, Muller SH, Meijer S, Oosterwijk JC, Beex LV, Tollenaar RA, de Koning HJ, Rutgers EJ, Klijn JG: Efficacy of MRI and mammography for breast-cancer screening in women with a familial or genetic predisposition. N Engl J Med 351:427–437, 2004PubMedCrossRef
6.
Zurück zum Zitat Lehman CD, Gatsonis C, Kuhl CK, Hendrick RE, Pisano ED, Hanna L, Peacock S, Smazal SF, Maki DD, Julian TB, DePeri ER, Bluemke DA, Schnall MD: MRI evaluation of the contralateral breast in women with recently diagnosed breast cancer. N Engl J Med 356:1295–1303, 2007PubMedCrossRef Lehman CD, Gatsonis C, Kuhl CK, Hendrick RE, Pisano ED, Hanna L, Peacock S, Smazal SF, Maki DD, Julian TB, DePeri ER, Bluemke DA, Schnall MD: MRI evaluation of the contralateral breast in women with recently diagnosed breast cancer. N Engl J Med 356:1295–1303, 2007PubMedCrossRef
7.
Zurück zum Zitat Pediconi F, Catalano C, Roselli A, Padula S, Altomari F, Moriconi E, Pronio AM, Kirchin MA, Passariello R: Contrast-enhanced MR mammography for evaluation of the contralateral breast in patients with diagnosed unilateral breast cancer or high-risk lesions. Radiology 243:670–680, 2007PubMedCrossRef Pediconi F, Catalano C, Roselli A, Padula S, Altomari F, Moriconi E, Pronio AM, Kirchin MA, Passariello R: Contrast-enhanced MR mammography for evaluation of the contralateral breast in patients with diagnosed unilateral breast cancer or high-risk lesions. Radiology 243:670–680, 2007PubMedCrossRef
8.
Zurück zum Zitat Saslow D, Boetes C, Burke W, Harms S, Leach MO, Lehman CD, Morris E, Pisano E, Schnall M, Sener S, Smith RA, Warner E, Yaffe M, Andrews KS, Russell CA: American Cancer Society guidelines for breast screening with MRI as an adjunct to mammography. Ca-a Cancer Journal for Clinicians 57:75–89, 2007PubMedCrossRef Saslow D, Boetes C, Burke W, Harms S, Leach MO, Lehman CD, Morris E, Pisano E, Schnall M, Sener S, Smith RA, Warner E, Yaffe M, Andrews KS, Russell CA: American Cancer Society guidelines for breast screening with MRI as an adjunct to mammography. Ca-a Cancer Journal for Clinicians 57:75–89, 2007PubMedCrossRef
9.
Zurück zum Zitat Sardanelli F, Podo F: Breast MR imaging in women at high-risk of breast cancer. Is something changing in early breast cancer detection? Eur Radiol 17:873–887, 2007PubMedCrossRef Sardanelli F, Podo F: Breast MR imaging in women at high-risk of breast cancer. Is something changing in early breast cancer detection? Eur Radiol 17:873–887, 2007PubMedCrossRef
10.
Zurück zum Zitat Lucht REA, Knopp MV, Brix G: Classification of signal-time curves from dynamic MR mammography by neural networks. Magn Reson Imaging 19:51–57, 2001PubMedCrossRef Lucht REA, Knopp MV, Brix G: Classification of signal-time curves from dynamic MR mammography by neural networks. Magn Reson Imaging 19:51–57, 2001PubMedCrossRef
11.
Zurück zum Zitat Gibbs P, Liney GP, Lowry M, Kneeshaw PJ, Turnbull LW: Differentiation of benign and malignant sub-1 cm breast lesions using dynamic contrast enhanced MRI. Breast 13:115–121, 2004PubMedCrossRef Gibbs P, Liney GP, Lowry M, Kneeshaw PJ, Turnbull LW: Differentiation of benign and malignant sub-1 cm breast lesions using dynamic contrast enhanced MRI. Breast 13:115–121, 2004PubMedCrossRef
12.
Zurück zum Zitat Schnall MD, Blume J, Bluemke DA, DeAngelis GA, DeBruhl N, Harms S, Heywang-Kobrunner SH, Hylton N, Kuhl CK, Pisano ED, Causer P, Schnitt SJ, Thickman D, Stelling CB, Weatherall PT, Lehman C, Gatsonis CA: Diagnostic architectural and dynamic features at breast MR imaging: multicenter study. Radiology 238:42–53, 2006PubMedCrossRef Schnall MD, Blume J, Bluemke DA, DeAngelis GA, DeBruhl N, Harms S, Heywang-Kobrunner SH, Hylton N, Kuhl CK, Pisano ED, Causer P, Schnitt SJ, Thickman D, Stelling CB, Weatherall PT, Lehman C, Gatsonis CA: Diagnostic architectural and dynamic features at breast MR imaging: multicenter study. Radiology 238:42–53, 2006PubMedCrossRef
13.
Zurück zum Zitat Vomweg TW, Buscema M, Kauczor HU, Teifke A, Intraligi M, Terzi S, Heussel CP, Achenbach T, Rieker O, Mayer D, Thelen M: Improved artificial neural networks in prediction of malignancy of lesions in contrast-enhanced MR-mammography. Med Phys 30:2350–2359, 2003PubMedCrossRef Vomweg TW, Buscema M, Kauczor HU, Teifke A, Intraligi M, Terzi S, Heussel CP, Achenbach T, Rieker O, Mayer D, Thelen M: Improved artificial neural networks in prediction of malignancy of lesions in contrast-enhanced MR-mammography. Med Phys 30:2350–2359, 2003PubMedCrossRef
14.
Zurück zum Zitat Szabo BK, Wiberg MK, Bone B, Aspelin P: Application of artificial neural networks to the analysis of dynamic MR imaging features of the breast. Eur Radiol 14:1217–1225, 2004PubMedCrossRef Szabo BK, Wiberg MK, Bone B, Aspelin P: Application of artificial neural networks to the analysis of dynamic MR imaging features of the breast. Eur Radiol 14:1217–1225, 2004PubMedCrossRef
15.
Zurück zum Zitat Chen WJ, Giger ML, Lan L, Bick U: Computerized interpretation of breast MRI: investigation of enhancement-variance dynamics. Med Phys 31:1076–1082, 2004PubMedCrossRef Chen WJ, Giger ML, Lan L, Bick U: Computerized interpretation of breast MRI: investigation of enhancement-variance dynamics. Med Phys 31:1076–1082, 2004PubMedCrossRef
16.
Zurück zum Zitat Mu T, Nandi AK, Rangayyan RM: Classification of breast masses using selected shape, edge-sharpness, and texture features with linear and kernel-based classifiers. J Digit Imaging 21:153–169, 2008PubMedCrossRef Mu T, Nandi AK, Rangayyan RM: Classification of breast masses using selected shape, edge-sharpness, and texture features with linear and kernel-based classifiers. J Digit Imaging 21:153–169, 2008PubMedCrossRef
17.
Zurück zum Zitat Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM: Design of a high-sensitivity classifier based on a genetic algorithm: application to computer-aided diagnosis. Phys Med Biol 43:2853–2871, 1998PubMedCrossRef Sahiner B, Chan HP, Petrick N, Helvie MA, Goodsitt MM: Design of a high-sensitivity classifier based on a genetic algorithm: application to computer-aided diagnosis. Phys Med Biol 43:2853–2871, 1998PubMedCrossRef
18.
Zurück zum Zitat Draper NR, Smith H: Applied regression analysis. Wiley, New York, 1998 Draper NR, Smith H: Applied regression analysis. Wiley, New York, 1998
19.
Zurück zum Zitat Korenberg MJ: Fast orthogonal algorithms for nonlinear system identification and time-series analysis. Advanced Methods of Physiological System Modeling 2:165–179, 1989CrossRef Korenberg MJ: Fast orthogonal algorithms for nonlinear system identification and time-series analysis. Advanced Methods of Physiological System Modeling 2:165–179, 1989CrossRef
20.
Zurück zum Zitat Minz I, Korenberg MJ: Modeling cooperative gene regulation using fast orthogonal search. The Open Bioinformatics Journal 2:80–89, 2008CrossRef Minz I, Korenberg MJ: Modeling cooperative gene regulation using fast orthogonal search. The Open Bioinformatics Journal 2:80–89, 2008CrossRef
21.
Zurück zum Zitat Shirdel E, Korenberg M, Madarnas Y: Neutropenia prediction based on first-cycle blood counts using a FOS-3NN classifier. Advances in Bioinformatics 2011:1–8, 2011CrossRef Shirdel E, Korenberg M, Madarnas Y: Neutropenia prediction based on first-cycle blood counts using a FOS-3NN classifier. Advances in Bioinformatics 2011:1–8, 2011CrossRef
22.
Zurück zum Zitat Korenberg MJ: Fast Orthogonal Identification of Nonlinear Dif2ference Equation and Functional Expansion Models. Proceedings of Midwest Symposium on Circuits and Systems: Syracuse, NY 1987 Korenberg MJ: Fast Orthogonal Identification of Nonlinear Dif2ference Equation and Functional Expansion Models. Proceedings of Midwest Symposium on Circuits and Systems: Syracuse, NY 1987
23.
Zurück zum Zitat Korenberg MJ: A robust orthogonal algorithm for system identification and time-series analysis. Biological Cybernetics 60:267–276, 1989PubMedCrossRef Korenberg MJ: A robust orthogonal algorithm for system identification and time-series analysis. Biological Cybernetics 60:267–276, 1989PubMedCrossRef
24.
Zurück zum Zitat MatLab Statistics Toolbox 7.5 User's Guide, Nantick, MA: The MathWorks Inc., 2011 MatLab Statistics Toolbox 7.5 User's Guide, Nantick, MA: The MathWorks Inc., 2011
25.
Zurück zum Zitat Shirdel E, Korenberg MJ, Madarnas Y: Use of fast orthogonal search to predict chemotherapy-induced leukopenia. Journal of Clinical Oncology, 2005 {ASCO} Annual Meeting Proceedings 23, 2005 Shirdel E, Korenberg MJ, Madarnas Y: Use of fast orthogonal search to predict chemotherapy-induced leukopenia. Journal of Clinical Oncology, 2005 {ASCO} Annual Meeting Proceedings 23, 2005
26.
Zurück zum Zitat Warner E, Plewes DB, Hill KA, Causer PA, Zubovits JT, Jong RA, Cutrara MR, DeBoer G, Yaffe MJ, Messner SJ, Meschino WS, Piron CA, Narod SA: Surveillance of BRCA1 and BRCA2 mutation carriers with magnetic resonance imaging, ultrasound, mammography, and clinical breast examination. JAMA: Journal of the American Medical Association 292:1317–1325, 2004PubMedCrossRef Warner E, Plewes DB, Hill KA, Causer PA, Zubovits JT, Jong RA, Cutrara MR, DeBoer G, Yaffe MJ, Messner SJ, Meschino WS, Piron CA, Narod SA: Surveillance of BRCA1 and BRCA2 mutation carriers with magnetic resonance imaging, ultrasound, mammography, and clinical breast examination. JAMA: Journal of the American Medical Association 292:1317–1325, 2004PubMedCrossRef
27.
Zurück zum Zitat Martel AL, Froh MS, Brock KK, Plewes DB, Barber DC: Evaluating an optical-flow-based registration algorithm for contrast-enhanced magnetic resonance imaging of the breast. Physics in Medicine and Biology 52:3803–3816, 2007PubMedCrossRef Martel AL, Froh MS, Brock KK, Plewes DB, Barber DC: Evaluating an optical-flow-based registration algorithm for contrast-enhanced magnetic resonance imaging of the breast. Physics in Medicine and Biology 52:3803–3816, 2007PubMedCrossRef
28.
Zurück zum Zitat Fienup JR: Invariant error metrics for image reconstruction. Applied Optics 36:8352–8352, 1997PubMedCrossRef Fienup JR: Invariant error metrics for image reconstruction. Applied Optics 36:8352–8352, 1997PubMedCrossRef
29.
Zurück zum Zitat Hylton N: Dynamic contrast-enhanced magnetic resonance imaging as an imaging biomarker. J Clin Oncol 24:3293–3298, 2006PubMedCrossRef Hylton N: Dynamic contrast-enhanced magnetic resonance imaging as an imaging biomarker. J Clin Oncol 24:3293–3298, 2006PubMedCrossRef
30.
Zurück zum Zitat Levman J, Leung T, Causer P, Plewes D, Martel AL: Classification of dynamic contrast-enhanced magnetic resonance breast lesions by support vector machines. IEEE Transactions on Medical Imaging 27:688–696, 2008PubMedCrossRef Levman J, Leung T, Causer P, Plewes D, Martel AL: Classification of dynamic contrast-enhanced magnetic resonance breast lesions by support vector machines. IEEE Transactions on Medical Imaging 27:688–696, 2008PubMedCrossRef
31.
Zurück zum Zitat Vapnik V: The nature of statistical learning theory. Springer, New York, 2000 Vapnik V: The nature of statistical learning theory. Springer, New York, 2000
32.
Zurück zum Zitat Hanley JA, McNeil BJ: A method of comparing the areas under receiver operating characteristic curves derived from the same cases. Radiology 148:839–843, 1983PubMed Hanley JA, McNeil BJ: A method of comparing the areas under receiver operating characteristic curves derived from the same cases. Radiology 148:839–843, 1983PubMed
33.
Zurück zum Zitat Metz CE, Herman BA, Roe CA: Statistical comparison of two ROC-curve estimates obtained from partially-paired datasets. Medical decision making: an international journal of the Society for Medical Decision Making 18:110–121, 1998CrossRef Metz CE, Herman BA, Roe CA: Statistical comparison of two ROC-curve estimates obtained from partially-paired datasets. Medical decision making: an international journal of the Society for Medical Decision Making 18:110–121, 1998CrossRef
Metadaten
Titel
Feature Selection in Computer-Aided Breast Cancer Diagnosis via Dynamic Contrast-Enhanced Magnetic Resonance Images
verfasst von
Megan Rakoczy
Donald McGaughey
Michael J. Korenberg
Jacob Levman
Anne L. Martel
Publikationsdatum
01.04.2013
Verlag
Springer-Verlag
Erschienen in
Journal of Imaging Informatics in Medicine / Ausgabe 2/2013
Print ISSN: 2948-2925
Elektronische ISSN: 2948-2933
DOI
https://doi.org/10.1007/s10278-012-9506-2

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