Background
Results
Increased HIV-infectivity rate of neuronal cells in the presence of nicotine
Differential expression of human synaptic plasticity genes in SK-N-MC cells infected with HIV and/or in the presence of nicotine
Genes
| Vorinostat | HIV | HIV + Vorinostat | Nicotine | Nicotine + Vorinostat | HIV + Nocotine | HIV + Nicotine + Vorinostat |
---|---|---|---|---|---|---|---|
ADAM10
5,6,9
| 1.47 | 1.89 | 1.24 |
4.12
| 1.45 | -1.03 | 1.11 |
ADCY1
3
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| 1.17 |
ADCY8
3
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
AKT1
7
|
3.10
| 2.96 |
3.84
|
3.42
|
4.59
| -1.32 |
4.23
|
ARC
1,9
| -1.09 | 1.30 | 1.54 | 1.07 | 2.79 |
-4.81
| 1.55 |
BDNF
1,3
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
CAMK2A
3
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
CAMK2G
3,7
| 1.48 | 1.11 | 1.46 | 1.16 | 1.62 |
-3.38
| 1.33 |
CDH2
3,5
| 1.12 |
-3.06
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.37 |
CEBPB
1
| 1.37 | 2.50 | 1.64 | 1.98 | 2.07 |
-3.07
| 2.04 |
CEBPD
1
| 1.39 | 1.89 | 1.96 | 1.35 |
3.03
|
-3.07
| 1.96 |
CNR1
3
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
CREM
1
|
-35.90
|
-9.78
|
-15.78
|
-8.26
|
-16.02
|
-25.41
|
-16.77
|
EGR1
1
| 2.37 | 1.13 | 1.34 |
-5.68
| 1.15 |
-9.24
| 1.20 |
EGR2
1
|
6.89
| 1.94 |
4.29
|
9.22
|
3.34
| 1.43 | 2.43 |
EGR3
1
| 1.86 | 1.01 |
3.89
| -1.76 | 2.94 |
-3.99
| 2.43 |
EGR4
1
| -1.95 |
-6.69
| -1.96 |
-3.20
| 1.03 |
-8.74
|
-4.28
|
EPHB2
8
| 1.71 | -2.97 | 1.74 |
-3.15
| 2.36 |
-3.99
| 1.43 |
FOS
1
| 1.15 | -1.24 | 1.07 | 1.07 | 1.43 |
-3.83
| -1.12 |
GABRA5
3,8
| 1.91 |
-3.39
| 1.12 | -1.62 | 2.26 |
-3.99
| -1.96 |
GRIA1
3,4,8,9
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
GRIA2
3,4,8
|
4.04
| 2.38 | 2.55 | 2.09 |
4.40
| 1.10 |
3.49
|
GRIA4
4,8,9
|
12.85
|
9.24
|
4.35
| 2.39 |
5.73
| -1.50 |
3.12
|
GRIN1
3,7,8,9
|
31.65
|
5.89
|
28.25
|
4.70
|
39.89
| -1.02 |
35.80
|
GRIN2A
3,5,7,8,9
| 2.26 |
-3.06
| 1.12 | -2.14 | 2.26 |
-3.99
| -1.07 |
GRIN2B
3,5,7,8,9
| 2.26 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.07 |
GRIN2C
3,7,8,9
| 2.26 | -1.73 | 1.80 |
-3.15
| 2.26 |
-3.99
| -1.07 |
GRIN2D
3,7,8
|
4.25
| 1.42 | 2.17 |
4.97
|
4.25
| -1.34 | 2.80 |
GRIP1
4
|
3.07
| -1.09 | 2.36 | 2.72 |
3.07
| -1.90 | 1.96 |
GRM1
4,8,9
| 1.12 |
-3.39
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
GRM2
4,8
| 1.85 | 1.93 | 1.12 |
3.79
| 2.26 | -1.47 | 1.01 |
GRM3
8,9
| 1.12 |
-3.39
| 1.12 | -2.11 | 2.26 |
-3.99
| -1.96 |
GRM4
8
| 2.26 |
-3.06
| 1.12 | 1.34 | 2.26 |
-3.99
| -1.21 |
GRM5
8
| 1.12 |
3.38
| 1.12 | -1.15 | 2.26 | -2.75 | -1.96 |
GRM7
8
| 1.12 |
-3.06
| 1.12 | 2.45 | 2.26 | -2.33 | -1.10 |
HOMER1
1,9
| -1.64 | -1.13 | -2.95 | 1.30 | -2.68 | -1.93 |
-3.13
|
IGF1
4
| 1.96 |
9.13
| 1.32 |
11.75
| 1.19 |
3.37
| 1.17 |
INHBA
2
|
4.15
| -2.11 | 2.03 | -1.43 | 2.22 |
-5.89
| 2.25 |
JUN
1
|
8.84
| -1.39 |
6.73
| -1.65 |
8.04
|
-11.61
|
6.33
|
JUNB
1
|
3.93
| 2.73 |
4.06
| 1.42 |
10.84
|
-3.97
|
3.79
|
KIF17
10
| 2.30 | -2.99 |
3.20
| -1.89 |
4.19
|
-9.30
|
3.34
|
MMP9
1,3,6
|
3.06
| -2.68 | 2.00 | -2.94 | 2.99 |
-10.32
| 1.62 |
NCAM1
5
| 1.17 |
-4.59
| 1.41 |
-6.80
| 1.40 |
-39.88
| 1.25 |
NFKB1
1
|
-20.48
|
-6.41
|
-35.26
|
-5.45
|
-26.76
|
-25.59
|
-48.77
|
NFKBIB
1
|
9.61
|
12.91
|
13.09
|
14.56
|
14.20
|
13.54
|
13.66
|
NGF
1,4
|
5.79
| 1.45 |
4.92
| 1.30 |
4.72
|
-3.01
|
6.55
|
NGFR
4
| 1.30 | 2.50 | 1.13 | 2.65 | 1.37 | -2.18 | 1.04 |
NOS1
4
| 1.12 |
-3.39
| 1.12 | 1.22 | 2.26 |
-3.99
| -1.96 |
NPTX2
1
| 1.12 | 2.22 | 1.12 | 1.28 | 2.26 |
-3.29
|
3.19
|
NR4A1
1
|
5.11
| 1.47 |
6.73
| 2.54 |
4.82
| -1.79 |
4.67
|
NTF3
1
| 1.12 |
-3.06
| 1.12 | 1.92 | 2.26 | -1.53 | -1.96 |
NTF4
3
| 1.98 | 1.14 |
4.82
| -1.30 |
5.85
|
-6.14
|
4.63
|
NTRK2
3
| 1.12 |
-3.40
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
PCDH8
1,5
| 2.37 | 2.53 | 1.29 |
3.37
| 2.04 | -1.68 | 1.35 |
PICK1
4,9
| 1.58 | 1.54 | 2.64 | 1.18 | 2.65 |
-4.21
| 2.30 |
PIM1
1
|
11.19
|
4.86
|
25.46
|
10.59
|
33.08
| 2.55 |
32.95
|
PLAT
1,4,6
| -1.03 | -1.82 | -1.03 | -2.34 | 1.97 |
-4.59
| -2.25 |
PLCG1
3
| 2.19 | 1.23 | 2.35 | 1.39 |
3.78
|
-3.62
| 2.91 |
PPP1CA
3,4,7
| -2.04 | 1.54 | 1.37 | -1.69 | 1.16 |
-13.25
| 1.48 |
PPP1R14A
4
| 1.12 |
-3.06
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
PPP2CA
4
|
6.52
|
10.06
|
6.87
|
13.31
|
7.20
|
3.28
|
6.64
|
PRKCA
3,4
|
5.40
| 2.80 |
3.29
|
7.23
|
4.43
| 2.24 | 2.93 |
PRKCG
3
| 2.30 |
-5.07
| 2.16 |
-4.84
|
3.22
|
-6.62
| 2.12 |
PRKG1
4
| 1.12 |
-3.06
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.47 |
RAB3A
3
|
86.46
|
56.49
|
106.15
|
75.27
|
91.65
|
15.81
|
103.39
|
RELA
1
| 1.30 | 2.00 | 1.34 |
3.26
| 1.45 | -1.12 | 1.25 |
RELN
5,6
| 1.12 |
-3.06
| 1.12 |
-3.15
| 2.26 |
-3.99
| -1.96 |
RGS2
1
|
5.29
| -1.40 | 2.62 | -1.12 |
4.46
| -2.90 | 2.38 |
RHEB
1
|
-49.73
|
-32.90
|
-57.68
|
-35.16
|
-46.92
|
-84.30
|
-69.94
|
SIRT1
10
| 2.29 | 2.58 | 1.91 |
4.70
| 1.89 | 1.52 | 1.28 |
SRF
1
| 2.70 | 2.83 | 1.82 |
3.19
| 2.33 | -1.44 | 1.60 |
TIMP1
6
|
-18.20
|
-38.00
|
-20.11
|
-24.02
|
-15.69
|
-79.20
|
-17.73
|
TNF
1,5
| -2.65 |
-5.47
| -2.28 | -2.63 | -1.42 |
-5.97
|
-9.30
|