Simple and complex lipid synthesis
Fatty acyl-CoAs are the building blocks for the synthesis of glycerolipids (TG, DG), glycerophospholipids (PC, PE, PI), sphingolipids, and sterol esters as key examples [
214]. In general, the lipid composition of mammalian cells predominantly consists of PC (~ 45–55%), PE (~ 15–25%), cholesterol (10–20%), PI (10–15%), phosphatidylserine (5–10%), and sphingomyelin (5–10%) [
215]. These lipids are distributed heterogeneously within the cell, with organelles possessing unique lipidomes, for example, lipid droplets are rich in TGs, whereas mitochondria uniquely harbor cardiolipin (see review [
216]). In general terms, the abundance of lipid classes is altered in cancer when compared to non-cancerous tissue, with PtdIns(3,4,5)P3 and PE levels elevated in cancer [
216] while ccRCC lipid droplet rich tumors are defined by increased TG and cholesteryl ester levels but also reduced PE levels [
217], and others have reported tumor specific abundance of lysophospholipids and other lipid species (recently reviewed extensively [
218]). However, there is great heterogeneity in the tumor lipidome between cancer types [
218] and the wide-spread utilization of sophisticated mass spectrometry-based lipidomic applications, alongside mass spectrometry imaging and other spatial approaches, will provide the platform to further define the tumor lipidome.
In this section, we will summarize the synthetic pathways in simple terms while trying to capture the complexity of the system and will avoid in-depth discussions of protein isoforms, subcellular localization, and hormonal regulation.
The synthesis of glycerolipids and glycerophospholipids starts with the acylation of glycerol-3-phosphate, which is derived from glycolysis, at the sn-1 position to form lysophosphatidate via the actions of glycerol-3-phosphate acyltransferases (GPAT) family of enzymes [
219] (Fig.
2). GPAT activity is approximately five times faster than fatty acyl-CoA thioesterase activity in mouse skeletal muscle [
165,
220], therefore outcompetes fatty acyl-CoA hydrolysis by ACOTs (see above). A second fatty acyl-CoA is attached to the sn-2 position of lysophosphatidate by LPAATs (formerly acylglycerol-3-phosphate acyltransferases (AGPAT)) to produce phosphatidate [
221,
222]. Phosphatidate can also be generated from the phosphorylation of DG via the actions of diacylglycerol kinases (DGK) [
223].
Phosphatidate is a substrate for several reactions. These include CDP-DG synthases, which replaces the phosphate of phosphatidate with CDP to produce CDP-DG, which itself is a substrate for both PI and phosphatidylglycerol (PG) synthesis. Phosphatidate is also a substrate for cardiolipin synthesis [
222]. Finally, phosphatidate is a substrate for lipin phosphatidate phosphatases which de-phosphorylate phosphatidate to produce sn-1,2 DG [
222]. sn-1,2 DG can also be generated from MG and a fatty acyl-CoA by the actions of monoacylglycerol acyltransferases (MOGATs). DG is a precursor for several glycerophospholipid classes, including PC, PS, and PE, that is synthesized by a complex array of metabolic reactions which was comprehensively reviewed recently [
215]. DG can also be acylated with a third and final fatty acyl-CoA on the sn-3 position to produce triacylglycerol by diacylglycerol acyltransferases (DGAT; Fig.
2). The synthesis of triacylglycerols is a prerequisite for lipid droplet synthesis [
224], a process that is highly regulated and complex (see review [
225]).
Many intermediates of glycerolipid and glycerophospholipid synthesis act as signaling molecules or have “bioactive” properties. For example, sn-1,2 DG activates protein kinase C signaling, but not sn-1,3 DG, which is produced by ATGL-catalyzed TG hydrolysis (see review [
226]). Likewise, phosphatidate regulating mTOR signaling [
29‐
31] and lysophosphatidate acts extracellularly to activate the lysophosphatidate receptor family (see review [
227]). These known downstream effects of these bioactive lipids can arise from alterations of multiple enzymes that reside at different subcellular locations, i.e., endoplasmic reticulum versus plasma membrane versus lipid droplet.
Next, we will take a simple biochemical approach, focusing on synthesis and utilization, to discuss the influence of intermediates and end products of glycerolipid and glycerophospholipid synthesis on cancer cell biology. Our approach is based upon the assumption that changes in gene/protein levels will result in changes in lipid levels and thereby affect cell biology. We have attempted to digest this into an easy to follow narrative, but it is undoubtedly a challenging and complex area of cell biology.
The first intermediate is lysophosphatidate which is regulated by GPAT and LPAAT enzymes. Lysophosphatidate levels are lower in human colorectal cancer tissues relative to those in paracarcinoma tissues, which was associated with increased mRNA levels of LPAATγ (AGPAT3) and LPAATδ (AGPAT4) [
228]. The lower levels of lysophosphatidate may be due to increased efflux of lysophosphatidate from cancer tissue and thereby act in a paracrine fashion to influence local immune cell function [
228]. This would suggest that reduced lysophosphatidate levels promote cancer cell promotion. However, increased GPAT expression, which would be predicted to increase lysophosphatidate levels, is observed in melanoma, lung, prostate, and breast cancer and is associated with shorter overall survival in ovarian cancer and shorter disease-free survival in HER2-positive breast cancer [
229]. In fact, knockdown of GPAT1 in breast and ovarian cancer cells, which reduced lysophosphatidate levels, slowed cell growth and migration and was rescued by lysophosphatidate supplementation [
230]. As such, it is conceivable that increased GPAT levels promote lysophosphatidate synthesis but at a lesser rate than LPAAT catalyzed conversion of lysophosphatidate into phosphatidate or that the rate of efflux is greater, resulting in reduced lysophosphatidate levels.
The next intermediate is phosphatidate, which is regulated by LPAAT, LPIN, and DGK enzymes as well as PLD (see review [
231]), which governs a range of signaling pathways [
29‐
32]. The increased levels of LPAAT in colorectal cancer [
228] would be expected to increase the conversion of lysophosphatidate to phosphatidate. However, LPIN1, one of three members of the LPIN family, is highly expressed in ovarian cancer [
232], hepatocellular carcinoma [
233], and breast cancer [
234,
235], and therefore causing an increased conversion of phosphatidate to DG and resulting in no accumulation of PA. Knockdown of LPIN1 reduced incorporation of extracellular palmitate into glycerophospholipids, indicating reduced synthesis and remodeling, which resulted in impaired basal-like triple-negative breast cancer cell viability and orthotopic xenograft growth [
234]. This suggests that enhanced conversion of phosphatidate into DG would be advantageous. However, increased levels of DGKs are commonly observed [
236‐
238], which predicts an increased conversion of DG to phosphatidate. In fact, overexpression of DGKα, one of ten isoforms, enhanced cancer cell proliferation and tumor growth, whereas knockdown of DGKα reduced cell viability in a range of cancer types [
236‐
238]. There is some conjecture on the role of or DGKζ, with one study reporting that the levels of DGKζ is elevated in glioblastoma and loss-of-function reduced proliferation [
239,
240], whereas DGKζ has been reported as downregulated in HCC and correlated with poorer overall survival [
241]. Likewise, DGKγ levels are reduced in colorectal cancer but loss-of-function impaired cell proliferation and invasion [
242]. Overall, it is not clear what the consensus view is of phosphatidate levels in cancer cells, or the levels of the various enzymes that regulate its levels.
The final lipid we will discuss in the glycero(phospho)lipid synthesis pathway is DG, which is regulated by LPIN, DGK, and DGAT enzymes, as well as PLCs which de-phosphorylate glycerophospholipids (see review [
243]). The reported increased expression of DGK in cancer cells should cause a reduction in DG levels [
236‐
238]; the increase in LPIN levels predicts an increase in DG [
232‐
235]. To complicate our understanding of DG metabolism in cancer, both DGAT isoforms, DGAT1 and DGAT2 that encoded by genes that belong to two distinct gene families [
244], are highly expressed in a range of cancers and is associated with increased TG levels and lipid droplet abundance [
245,
246]. We recently showed that pharmacological inhibition of DGAT1 in breast and prostate cancer cells blunted TG synthesis and influenced cell viability [
3,
4]. Likewise, knockdown of DGAT1 reduced lipid droplet number and cell proliferation and invasion of prostate cancer cells [
135,
247] and glioblastoma [
246]. However, the protein levels of DGAT2 are reduced in HCC, and overexpression of DGAT2 inhibits cell proliferation and colony formation in vitro and tumor formation in vivo [
248]. Both DGAT1 and DGAT2 catalyze the conversion of DG into TG, but they do have distinct and overlapping functions in other cell types [
249]. Overall, the role of DG, and other lipid intermediates of the glycero(phospho)lipid synthetic pathway, on cancer cell biology remains to be resolved.
Fatty acyl-CoAs are also building blocks for sphingolipids such as ceramide (Fig.
2). De novo sphingolipid synthesis starts with the condensation of palmitoyl-CoA and serine via the actions of serine palmitoyl-CoA transferase to form 3-ketosphinanine [
250]. Following the conversion of 3-ketosphinanine to sphinganine, a fatty acyl-CoA is attached to the backbone by ceramide synthase to produce dihydro-ceramide, which can be further modified to form ceramide and into other complex sphingolipids like sphingomyelin, sphingosine-1-phosphate, and glycosphingolipids [
251]. In general terms, ceramide and sphingosine-1-phosphate have opposing roles in regulating cancer cell death and survival, and the role that ceramide synthases and sphingosine kinases have been recently reviewed in detail [
115]. Further, we point readers to recent reviews on sphingomyelins and other sphingolipids in cancer [
252] as they fall outside the scope of this review.
Another destination for fatty acyl-CoAs is sterol esters, in particular cholesteryl ester, which is the product of the addition of a fatty acyl-CoA to cholesterol that is catalyzed by sterol O-acyltransferases (SOATs), also called acyl-CoA:cholesterol acyltransferases (ACATs). Accumulation of cholesteryl ester in lipid droplets has been reported in pancreatic [
253] and prostate cancer [
120] as recent examples, and that inhibiting SOAT1 blocked cholesteryl ester synthesis and suppress tumor growth or cancer cell proliferation. It is important to note, as we have previously, that it is challenging to interpret loss-of-function studies of SOATs since altering this reaction will influence both cholesterol and fatty acid levels [
120,
254]. That said, a recent study demonstrated an interdependency between the de novo production of oleoyl-CoA via SCD and cholesteryl ester synthesis, at the expense of triacylglycerol synthesis [
255]. This suggests that, in certain settings, fatty acyl-CoA availability, in particular oleoyl-CoA, has wide-ranging influences on many aspects of cellular lipid metabolism beyond just glycero- and glycerophospholipid synthesis.
Finally, alongside their contribution to the synthesis of glycerophospholipids, fatty acyl-CoAs are also substrates for cellular membrane remodeling. This remodeling involves the deacylation and acylation of glycerophospholipids, which is called the Lands’ cycle [
256]. As highlighted above, PLAs can hydrolyze glycerophospholipids to remove a free fatty acid and produce a lysophospholipid. A new fatty acyl-CoA can be attached to the lysophospholipid by lysophospholipid acyltransferase family of enzymes (LPLAT). This family consists of two subfamilies, the 1-acylglycerol-3-phosphate O-acyltransferase (AGPAT) family and the membrane-bound O-acyltransferases (MBOAT) family [
257]. This LPLAT-catalyzed reaction does not alter the abundance of glycerophospholipids (i.e., PC, PE, PS, etc.) but does alter the species based upon the makeup of the fatty acyl chains, i.e., changing the saturation and/or chain lengths of the fatty acyl chains. Several members of the LPLAT family have been linked with cancer cell behavior. For example, elevated lysophosphatidylcholine acyltransferase 1 (LPCAT1) levels are linked with poor prognosis and early tumor recurrence in breast cancer [
258,
259], gastric and colorectal cancer [
260,
261], prostate cancer [
262,
263], ccRCC [
264], liver cancer [
265], and EGFR-dependent glioblastoma [
266]. Tumor tissues and cancer cells with high LPCAT1 expression had increased PC and decreased LPC levels [
260,
264,
266], and loss-of-function impaired cell growth and survival [
264,
266]. Other members of the LPLAT family have also been implicated in tumor biology, including increased LPCAT2 supporting chemoresistance in colorectal cancer [
267,
268], increased protein levels in breast and cervical cancer tissue [
269], loss of LPCAT3 enhancing intestinal tumor formation via a cholesterol synthesis mechanism [
270], and lysophosphatidylinositol-acyltransferase 1 (LPIAT1) mediated prostaglandin production and non-small cell lung cancer cell growth [
271]. It is important to highlight that members of the LPLAT family have substrate specificity in terms of lysophospholipid class (i.e., PC, PI, etc.) and fatty acyl-CoA species which influences the biophysical properties of cell membranes.
Mitochondrial and peroxisome oxidation
In principle, the primary catabolic pathway for fatty acyl-CoAs is β-oxidation. Like many other aspects of fatty acid metabolism, specific pathways exist to deal with the diversity of fatty acid species as determined by chain length and desaturation, which we will discuss in some detail.
Increased fatty acid oxidation rates have been reported in many cancer types including lung, breast, liver (see review [
276]), and prostate [
4]. Further, we recently showed that “receptor-positive” breast and prostate cancer cells (MCF-7 and C4-2B cells respectively) have faster rates of fatty acid oxidation than “receptor-negative” cells (MDA-MB-231 and PC-3 cells) [
3,
4], whereas others have reported that triple-negative breast cancer cells with high MYC expressed have faster rates of fatty acid oxidation compared to low MYC expressing triple-negative breast cancer cells and receptor-positive cells (T47D) [
277]. Further, these basal rates are increased in a range of cancer cell lines following exposure to high levels of extracellular fatty acids [
3,
5] and co-culturing with adipocytes [
5,
133].
The rate of fatty acid oxidation is controlled by several mechanisms, including enzyme/protein levels, allosteric regulation of enzyme activity, and substrate availability. Long-chain fatty acyl-CoAs require the carnitine palmitoyltransferase (CPT) system to be shuttled into the mitochondrial matrix (Fig.
4) [
76], unlike short- and medium-chain fatty acyl-CoAs that can freely diffuse through the mitochondrial membranes [
278]. Readers are pointed to a recent comprehensive review of the metabolism of short- and medium-chain fatty acyl-CoAs for additional insight into their role in cell biology [
278]. Briefly, the CPT system consists of CPT1, carnitine-acylcarnitine translocase (CACT) and CPT2, whereby fatty acyl-CoAs are converted to fatty acyl-carnitines by the action of CPT1 on the outer mitochondrial membrane (Fig.
4). CACT is located on the inner mitochondrial membrane and shuttles acylcarnitines into the mitochondrial matrix, where they are reconverted back to fatty acyl-CoA by CPT2 on the matrix side of the inner membrane. CPT1 levels are increased in many cancers and targeting CPT1 impairs cancer cell growth and viability (see reviews [
276,
279]). However, others have reported that fatty acid oxidation genes are downregulated in multiple tumor types [
280], including clear cell renal cell carcinoma where decreased CPT1 protein levels reduces fatty acid transport into the mitochondria, leading to fatty acid storage in lipid droplets, which is a hallmark feature of ccRCC [
281]. Another study reported that increasing CPT1 protein levels in MDA-MB-231 breast cancer cells impaired proliferation and migration [
280]. Conversely, others have reported that CPT1 expression is elevated in triple-negative breast cancer cells that overexpress c-Myc, leading to increased fatty acid oxidation, and that inhibition of CPT1 reduced growth of Myc-driven triple-negative breast cancer tumors [
277]. Like other aspects of cellular fatty acid metabolism, CPT1 protein levels are increased in response to high levels of extracellular fatty acids [
4,
5] and co-culturing with adipocytes [
5,
133,
282], associated with an increase in the rate of fatty acid oxidation.
The enzymatic activity of CPT1 is allosterically inhibited by malonyl-CoA, which is produced from acetyl-CoA by ACC. The reverse reaction is catalyzed by malonyl-CoA decarboxylase. Studies in the liver and skeletal muscle have shown that ACC2 is the major isoform that produces malonyl-CoA that inhibits CPT1 as it localizes to the outer mitochondrial membrane [
283]; cytosolic ACC1 participates in de novo fatty acid synthesis (discussed above). Protein levels of ACC2 are reduced in a range of acidic pH-adapted cancer cells [
284] and during breast cancer cell EMT [
285], and associates with increased fatty acid oxidation.
Several mechanisms have been proposed to explain how the inhibition of CPT1 activity, to reduce fatty acid oxidation, slows cell proliferation. These include reduced production of ATP and NADPH levels, which are required for biomass synthesis and redox balance [
279,
286]. More recently, it has been shown that inhibition of CPT1 and fatty acid oxidation reduces the activation of the proto-oncogene SRC, including mitochondrially-localized SRC, to result in reduced in vitro and in vivo triple-negative breast cancer cell and tumor growth [
287]. Notably, the autophosphorylation of SRC, which is required for its activation, utilize ATP generated from mitochondrial oxidative phosphorylation, and in turn activated Src phosphorylates mitochondrial ETC proteins to maintain its activated status, and thereby regulate mitochondrial function and cell viability [
287]. Pharmacological inhibition of fatty acid oxidation induces cell cycle arrest at G0/G1 phase [
286]. Finally, CPT1 activity also regulates the production of acetyl groups which are used for histone acetylation and thereby control cell growth [
288]. Collectively, these studies highlight a complex and diverse array of mechanisms by which CPT1 influences cells cancer cell viability.
Most studies exploring the links between mitochondrial fatty acid oxidation and cancer cell behavior have used etomoxir, which is an irreversible inhibitor of CPT1. Recently, a novel mechanism by which etomoxir inhibits CPT1 activity was reported, whereby etomoxir disrupts the interaction between CPT1A and Rab14, which localizes to the lipid droplet [
289]. This study demonstrated the CPT1A-Rab14 interaction likely forms contact sites between mitochondria and lipid droplets, to provide fatty acids for mitochondrial metabolism. While the use of etomoxir is very common, it is not common that the rate of fatty acid oxidation is reported, and the importance of this is exemplified by reports that breast cancer cell proliferation was not altered when fatty acid oxidation was inhibited by 90% by 10 μM etomoxir; it was only at doses ≥ 200 μM of etomoxir that breast cancer cell proliferation was impaired [
290]. This study highlighted that etomoxir has an off-target effect at commonly used dosages, including inhibiting complex I of the electron transport chain. Further, the authors also demonstrated that CPT1 regulates other aspects of mitochondrial biology beyond β-oxidation, including supplying the mitochondria with long-chain fatty acyl-CoAs for glycerophospholipid remodeling and protein acylation that are essential for healthy mitochondrial function and cancer cell proliferation [
290]. These observations suggest that not all intra-mitochondrial fatty acyl-CoAs enter the β-oxidation pathway but also act as substrates for complex lipid synthesis and acylation reactions within mitochondria.
Downstream of CPT1 is the transfer of fatty acyl-carnitines across the inner mitochondrial membrane by CACT. This is followed by the conversion of fatty acyl-carnitines back to fatty acyl-CoAs by CPT2, which has received very little attention, even though there is only one isoform, unlike CPT1. Protein levels of CPT2 are increased in prostate cancer [
291], and pharmacological inhibition or genetic loss-of-function impaired cell growth [
277,
291].
Now that fatty acyl-CoAs are in the mitochondrial matrix, they can be substrates for β-oxidation. The oxidation of saturated fatty acyl-CoAs is relatively straightforward, involving involves four consecutive reactions: (i) desaturation of the bond between C2 and C3 by the FAD-dependent acyl-CoA dehydrogenase (ACAD) family; (ii) hydration of the formed 2-enoyl-CoA by enoyl-CoA hydratase; (iii) dehydrogenation of 3-hydroxyacyl-CoA by hydroxyacyl-CoA dehydrogenase; and finally (iv) thiolytic cleavage of 3-oxoacyl-CoA by 3-ketoacyl-CoA thiolase (Fig.
4) [
292]. These reactions shorten the fatty acyl-CoA by two carbons between carbons 2 and 3 to produce a shorten acyl-CoA and acetyl-CoA, which the latter is used as a substrate for the TCA cycle. Each cycle also produces one FADH
2 and one NADH that are reducing equivalents that fuel the electron transport chain to produce ATP.
The presence of one or more double bond introduces complexity into the oxidation of these monounsaturated or polyunsaturated fatty acyl-CoAs (Fig.
4). As an example, oleoyl-CoA contains a double bond between the 9
th and 10
th carbon and undergoes three cycles of β-oxidation until its double bond is “exposed.” The double bond is removed by Δ
3, Δ
2-enoyl-CoA isomerase (encoded by
ECI1) and the resulting saturated acyl-CoA re-enters the β-oxidation pathway. PUFA catabolism also requires the “removal” of the double bonds as well as the repositioning of specific double bonds. An example is the oxidation of linoleoyl-CoA (linolenic acid; C18:2 (n-9, 12)). These steps involve Δ
3, Δ
2-enoyl-CoA isomerase to “remove” the first double between carbons 9 and 10, while the bond between carbon 11 and 12 (which at this point of oxidation is now carbon 4 and 5) is firstly dealt with by 2,4-dienoyl CoA-reductase (encoded by
DECR1), using NADPH as a co-factor, to form an acyl-CoA with one double bond between carbon 2 and 3 that is then removed by Δ
3, Δ
2-enoyl-CoA isomerase, producing a saturated acyl-CoA as a substrate for β-oxidation.
In general, a small number of studies have explored the role of enzymes of mitochondrial β-oxidation, compared to CPT1. The ACAD family of enzymes contains four closely related, chain length-specific acyl-CoA dehydrogenases, including very long-chain, long-chain, medium-chain, and short-chain ACADS; ACADVL, ACADL, ACADM, and ACADS, respectively. ACADL is downregulated in HCC and overexpression results in reduced in vitro cell growth and in vivo tumor size [
293]. Conversely, ACADL is upregulated in esophageal squamous cell carcinoma cell lines and tumor tissue and predicts worse outcomes [
294]. Enoyl-CoA hydratase catalyzes the second step of mitochondrial β-oxidation and is upregulated and downregulated in a range of cancers (see review [
295]). More recently, the reduction in fatty acid, and branched-chain amino acid, oxidation as a consequence of downregulation of enoyl-CoA hydratase leads to lipid accumulation in clear cell renal cell carcinoma, but also results in mTOR activation and cell proliferation [
296,
297]. Collectively, these observations highlight a complex role for mitochondrial β-oxidation of long-chain fatty acids, beyond the abundance of CPT1 in tumor fatty acid metabolism.
Alterations in the genes encoding key enzymes that regulate the levels or oxidation status of PUFAs have been reported, and are often closely linked to ferroptosis, as PUFA oxidation is the major cellular stimulus for this iron-dependent form of programmed cell death. Addition of PUFAs, but not other FAs, to cancer cells markedly sensitizes them to induction of ferroptosis [
298] due to their high susceptibility to oxidative damage. This can occur enzymatically via the action of lipoxygenases (ALOX1-6), which catalyze deoxygenation of PUFAs to form lipid hydroperoxides, or as discovered in a lentiviral screen of genes that suppress ferroptosis, the catalytic subunit of the phosphorylase kinase complex, PHKG2 [
298] which, when inhibited, prevents the formation of lipid hydroperoxides. Interrogation of clinical tissue-derived datasets has revealed that two of the enzymes involved in the auxiliary pathway of PUFA beta-oxidation, ECI2 and the rate-limiting enzyme DECR1, are overexpressed in human prostate cancers [
299‐
301] and associated with poorer overall patient survival [
299,
300]. Selective knockdown of these enzymes impacts growth and tumorigenicity of prostate cancer cells, but not non-malignant lines, coincident with an accumulation of cellular PUFAs, resulting in increased lipid peroxidation and induction of ferroptosis [
300,
301]. Androgenic regulation of these enzymes [
299,
300] further emphasizes their potential importance to prostate tumorigenesis. These effects, however, appear to be cancer type-specific, with DECR1 shown to be decreased in mouse models of breast cancer and in clinical breast tumors compared to normal mammary gland [
302,
303], and ectopic expression of DECR1 in HER2/neu-transformed breast cancer cells reducing tumorigenesis—an effect linked to reduced de novo lipogenesis [
303]. The future pharmacological modulation of these enzymes, which currently lack small molecule inhibitors or activators, offers the interesting potential to selectively influence PUFA oxidation, compared to broad-spectrum fatty acid oxidation inhibitors of CPT1 for example.
Very-long chain fatty acyl-CoAs (≥ C22) undergo peroxisomal β-oxidation to shorten the fatty acyl-CoAs into smaller units before they are transferred to mitochondria (Fig.
4). Briefly, this process involves the transportation of very long-chain fatty acyl-CoAs into the peroxisome by the peroxisomal ATP-binding cassette (ABC) transporter subfamily D. Very-long chain fatty acyl-CoAs then enter the peroxisomal β-oxidation pathway which consists of 4 steps: (1) oxidation, (2) hydration, (3) dehydrogenation, and (4) thiolysis (see review [
304]). The interaction between peroxisomes and mitochondria, including the transfer of shortened fatty acyl-CoAs (~ 8–10 carbons long) and acetyl-CoA, is highly complex [
305]. Briefly, fatty acyl-CoAs are converted to acylcarnitines by peroxisomal carnitine octanoyltransferase and transported out of the peroxisome, then into the mitochondria by CACT, where they are then a substrate for mitochondrial CPT2. Peroxisomal acetyl-CoA can either be converted to acetylcarnitine by carnitine acetyltransferase or hydrolyzed by peroxisomal ACOTs and then transferred out of the peroxisomes.
The literature reports varying patterns of peroxisomal gene and protein levels and metabolic flux in cancer cells compared to normal cells (see review [
304]). For example, many studies report reduced peroxisomal protein abundance or enzymatic activities in colon, breast, and hepatocellular carcinoma, whereas others have reported
PEX2 mRNA, which encodes peroxisomal biogenesis factor 2 that is required for peroxisome biogenesis, is increased in hepatocellular carcinoma and that knockdown of
PEX2 reduced tumor formation (see review [
306]). The complex role of peroxisomes in cancer, including ROS balance and non-β-oxidation pathways, has been recently reviewed [
304,
306]. In terms of peroxisomal β-oxidation of very long-chain fatty acyl-CoAs, the expression of the four members of the ABCD transporter family differs between tumor and normal tissue, and between cancer types [
307]. For example, ABCD1 is upregulated in breast cancer, unchanged in colorectal and downregulated in melanoma, whereas ABCD2 is downregulated in breast and colorectal cancer [
307]. The oxidation step in peroxisomes is catalyzed by acyl-CoA oxidases (ACOX), and to date, there is very little functional understanding of ACOXs in cancer; likewise, the other enzymes of peroxisomal β-oxidation include D-bifunctional protein (DBP, encoded by
HSD17B4), peroxisomal 3-ketoacyl-CoA thiolase (encoded by
ACAA1), or sterol-carrier protein X (SCPx). Similarly, enzymes involved in auxiliary pathways including peroxisomal 2,4-dienoyl CoA reductase (DECR2), which is related to mitochondrial DECR1, peroxisomal Δ
3, Δ
2-enoyl-CoA isomerases, and downstream export processes catalyzed by peroxisomal carnitine octanoyltransferase (COT), carnitine acetyltransferase (CAT), and ACOTs (see reviews [
305,
308]) are currently not well described in cancer. To date, gene expression analysis shows that many of the genes involved in peroxisomal fatty acid metabolism are increased in breast cancer (reviewed in [
304]). However, it is not clear whether these changes in gene expression results in altered fatty acid metabolism.