Skip to main content
Erschienen in: Archives of Virology 7/2013

01.07.2013 | Brief Report

Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine

verfasst von: Zufan Sisay, Qiuhong Wang, Tomoichiro Oka, Linda Saif

Erschienen in: Archives of Virology | Ausgabe 7/2013

Einloggen, um Zugang zu erhalten

Abstract

The prevalence of porcine sapoviruses (SaVs) and noroviruses (NoVs) in nursing piglets on three pig farms in Ohio was studied. Fecal samples (n = 139) were collected from individual pigs and screened for caliciviruses by RT-PCR. Phylogenetic analysis was conducted using partial sequences of the RNA polymerase region. Three different SaV genogroups, including a newly emerging one (DO19 Korea-like) were detected. No NoVs were detected. Kobuviruses, emerging members of the family Picornaviridae, were detected by primers designed for SaV. To our knowledge, this is the first report of porcine DO19 Korea-like SaV and kobuvirus in the United States.
Literatur
1.
Zurück zum Zitat Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346(2):312–323PubMedCrossRef Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346(2):312–323PubMedCrossRef
2.
Zurück zum Zitat Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X (2004) Genetic diversity among sapoviruses. Arch Virol 149(7):1309–1323PubMedCrossRef Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X (2004) Genetic diversity among sapoviruses. Arch Virol 149(7):1309–1323PubMedCrossRef
3.
Zurück zum Zitat Oka T, Mori K, Iritani N, Harada S, Ueki Y, Iizuka S, Mise K, Murakami K, Wakita T, Katayama K (2012) Human sapovirus classification based on complete capsid nucleotide sequences. Arch Virol 157(2):349–352. doi:10.1007/s00705-011-1161-2 PubMedCrossRef Oka T, Mori K, Iritani N, Harada S, Ueki Y, Iizuka S, Mise K, Murakami K, Wakita T, Katayama K (2012) Human sapovirus classification based on complete capsid nucleotide sequences. Arch Virol 157(2):349–352. doi:10.​1007/​s00705-011-1161-2 PubMedCrossRef
4.
Zurück zum Zitat Guo M, Chang KO, Hardy ME, Zhang Q, Parwani AV, Saif LJ (1999) Molecular characterization of a porcine enteric calicivirus genetically related to sapporo-like human caliciviruses. J Virol 73(11):9625–9631PubMed Guo M, Chang KO, Hardy ME, Zhang Q, Parwani AV, Saif LJ (1999) Molecular characterization of a porcine enteric calicivirus genetically related to sapporo-like human caliciviruses. J Virol 73(11):9625–9631PubMed
5.
Zurück zum Zitat Saif LJ, Bohl EH, Theil KW, Cross RF, House JA (1980) Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs. J Clin Microbiol 12(1):105–111PubMed Saif LJ, Bohl EH, Theil KW, Cross RF, House JA (1980) Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs. J Clin Microbiol 12(1):105–111PubMed
6.
Zurück zum Zitat Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ (2005) Genetic diversity and recombination of porcine sapoviruses. J Clin Microbiol 43(12):5963–5972PubMedCrossRef Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ (2005) Genetic diversity and recombination of porcine sapoviruses. J Clin Microbiol 43(12):5963–5972PubMedCrossRef
7.
Zurück zum Zitat Yin Y, Tohya Y, Ogawa Y, Numazawa D, Kato K, Akashi H (2006) Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch Virol 151(9):1749–1759PubMedCrossRef Yin Y, Tohya Y, Ogawa Y, Numazawa D, Kato K, Akashi H (2006) Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch Virol 151(9):1749–1759PubMedCrossRef
8.
Zurück zum Zitat Martella V, Lorusso E, Banyai K, Decaro N, Corrente M, Elia G, Cavalli A, Radogna A, Costantini V, Saif LJ, Lavazza A, Di Trani L, Buonavoglia C (2008) Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46(6):1907–1913. doi:10.1128/JCM.00341-08 PubMedCrossRef Martella V, Lorusso E, Banyai K, Decaro N, Corrente M, Elia G, Cavalli A, Radogna A, Costantini V, Saif LJ, Lavazza A, Di Trani L, Buonavoglia C (2008) Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46(6):1907–1913. doi:10.​1128/​JCM.​00341-08 PubMedCrossRef
9.
Zurück zum Zitat Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di Bartolo I, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskemeti S, Halaihel N, Buesa J, Johnsen C, Hjulsager CK, Larsen LE, Koopmans M, Bottiger B (2010) Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48(2):363–368. doi:10.1128/JCM.01279-09 PubMedCrossRef Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di Bartolo I, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskemeti S, Halaihel N, Buesa J, Johnsen C, Hjulsager CK, Larsen LE, Koopmans M, Bottiger B (2010) Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48(2):363–368. doi:10.​1128/​JCM.​01279-09 PubMedCrossRef
10.
Zurück zum Zitat Nakamura K, Saga Y, Iwai M, Obara M, Horimoto E, Hasegawa S, Kurata T, Okumura H, Nagoshi M, Takizawa T (2010) Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during fiscal year 2008. J Clin Microbiol 48(4):1215–1222. doi:10.1128/JCM.02130-09 PubMedCrossRef Nakamura K, Saga Y, Iwai M, Obara M, Horimoto E, Hasegawa S, Kurata T, Okumura H, Nagoshi M, Takizawa T (2010) Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during fiscal year 2008. J Clin Microbiol 48(4):1215–1222. doi:10.​1128/​JCM.​02130-09 PubMedCrossRef
11.
12.
Zurück zum Zitat Kim HJ, Cho HS, Cho KO, Park NY (2006) Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J Vet Med B Infect Dis Vet Public Health 53(4):155–159PubMedCrossRef Kim HJ, Cho HS, Cho KO, Park NY (2006) Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J Vet Med B Infect Dis Vet Public Health 53(4):155–159PubMedCrossRef
13.
15.
Zurück zum Zitat Wang QH, Souza M, Funk JA, Zhang W, Saif LJ (2006) Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J Clin Microbiol 44(6):2057–2062PubMedCrossRef Wang QH, Souza M, Funk JA, Zhang W, Saif LJ (2006) Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J Clin Microbiol 44(6):2057–2062PubMedCrossRef
16.
Zurück zum Zitat Dufkova L, Scigalkova I, Moutelikova R, Malenovska H, Prodelalova J (2012) Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype. Arch Virol. doi:10.1007/s00705-012-1528-z PubMed Dufkova L, Scigalkova I, Moutelikova R, Malenovska H, Prodelalova J (2012) Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype. Arch Virol. doi:10.​1007/​s00705-012-1528-z PubMed
18.
Zurück zum Zitat Yamashita T, Kobayashi S, Sakae K, Nakata S, Chiba S, Ishihara Y, Isomura S (1991) Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J Infect Dis 164(5):954–957PubMedCrossRef Yamashita T, Kobayashi S, Sakae K, Nakata S, Chiba S, Ishihara Y, Isomura S (1991) Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J Infect Dis 164(5):954–957PubMedCrossRef
19.
Zurück zum Zitat Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K (2003) Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84(Pt 11):3069–3077PubMedCrossRef Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K (2003) Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84(Pt 11):3069–3077PubMedCrossRef
20.
Zurück zum Zitat Reuter G, Boldizsar A, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154(1):101–108. doi:10.1007/s00705-008-0288-2 PubMedCrossRef Reuter G, Boldizsar A, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154(1):101–108. doi:10.​1007/​s00705-008-0288-2 PubMedCrossRef
22.
Zurück zum Zitat Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155(11):1803–1811. doi:10.1007/s00705-010-0774-1 PubMedCrossRef Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155(11):1803–1811. doi:10.​1007/​s00705-010-0774-1 PubMedCrossRef
23.
Zurück zum Zitat Wang QH, Chang KO, Han MG, Sreevatsan S, Saif LJ (2006) Development of a new microwell hybridization assay and an internal control RNA for the detection of porcine noroviruses and sapoviruses by reverse transcription-PCR. J Virol Methods 132(1–2):135–145PubMedCrossRef Wang QH, Chang KO, Han MG, Sreevatsan S, Saif LJ (2006) Development of a new microwell hybridization assay and an internal control RNA for the detection of porcine noroviruses and sapoviruses by reverse transcription-PCR. J Virol Methods 132(1–2):135–145PubMedCrossRef
24.
Zurück zum Zitat Wang QH, Han MG, Cheetham S, Souza M, Funk JA, Saif LJ (2005) Porcine noroviruses related to human noroviruses. Emerg Infect Dis 11(12):1874–1881PubMedCrossRef Wang QH, Han MG, Cheetham S, Souza M, Funk JA, Saif LJ (2005) Porcine noroviruses related to human noroviruses. Emerg Infect Dis 11(12):1874–1881PubMedCrossRef
25.
Zurück zum Zitat Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, Matson DO (1999) Design and evaluation of a primer pair that detects both norwalk- and sapporo-like caliciviruses by RT-PCR. J Virol Methods 83(1–2):145–154PubMedCrossRef Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, Matson DO (1999) Design and evaluation of a primer pair that detects both norwalk- and sapporo-like caliciviruses by RT-PCR. J Virol Methods 83(1–2):145–154PubMedCrossRef
26.
Zurück zum Zitat Le Guyader F, Estes MK, Hardy ME, Neill FH, Green J, Brown DW, Atmar RL (1996) Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch Virol 141(11):2225–2235PubMedCrossRef Le Guyader F, Estes MK, Hardy ME, Neill FH, Green J, Brown DW, Atmar RL (1996) Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch Virol 141(11):2225–2235PubMedCrossRef
27.
Zurück zum Zitat Vennema H, de Bruin E, Koopmans M (2002) Rational optimization of generic primers used for norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J Clin Virol 25(2):233–235PubMedCrossRef Vennema H, de Bruin E, Koopmans M (2002) Rational optimization of generic primers used for norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J Clin Virol 25(2):233–235PubMedCrossRef
28.
Zurück zum Zitat Amimo JO, Vlasova AN, Saif LJ (2013) Detection and genetic diversity of porcine group A rotaviruses in historic (2004) and recent (2011/12) swine fecal samples in Ohio, USA: Predominance of G9P[13] genotype in nursing piglets (accepted) Amimo JO, Vlasova AN, Saif LJ (2013) Detection and genetic diversity of porcine group A rotaviruses in historic (2004) and recent (2011/12) swine fecal samples in Ohio, USA: Predominance of G9P[13] genotype in nursing piglets (accepted)
31.
Zurück zum Zitat Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infection, genetics and evolution. J Mol Epidemiol Evol Genet Infect Dis 10(7):950–954. doi:10.1016/j.meegid.2010.06.001 CrossRef Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infection, genetics and evolution. J Mol Epidemiol Evol Genet Infect Dis 10(7):950–954. doi:10.​1016/​j.​meegid.​2010.​06.​001 CrossRef
Metadaten
Titel
Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine
verfasst von
Zufan Sisay
Qiuhong Wang
Tomoichiro Oka
Linda Saif
Publikationsdatum
01.07.2013
Verlag
Springer Vienna
Erschienen in
Archives of Virology / Ausgabe 7/2013
Print ISSN: 0304-8608
Elektronische ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-013-1619-5

Weitere Artikel der Ausgabe 7/2013

Archives of Virology 7/2013 Zur Ausgabe

Leitlinien kompakt für die Innere Medizin

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Notfall-TEP der Hüfte ist auch bei 90-Jährigen machbar

26.04.2024 Hüft-TEP Nachrichten

Ob bei einer Notfalloperation nach Schenkelhalsfraktur eine Hemiarthroplastik oder eine totale Endoprothese (TEP) eingebaut wird, sollte nicht allein vom Alter der Patientinnen und Patienten abhängen. Auch über 90-Jährige können von der TEP profitieren.

Niedriger diastolischer Blutdruck erhöht Risiko für schwere kardiovaskuläre Komplikationen

25.04.2024 Hypotonie Nachrichten

Wenn unter einer medikamentösen Hochdrucktherapie der diastolische Blutdruck in den Keller geht, steigt das Risiko für schwere kardiovaskuläre Ereignisse: Darauf deutet eine Sekundäranalyse der SPRINT-Studie hin.

Bei schweren Reaktionen auf Insektenstiche empfiehlt sich eine spezifische Immuntherapie

Insektenstiche sind bei Erwachsenen die häufigsten Auslöser einer Anaphylaxie. Einen wirksamen Schutz vor schweren anaphylaktischen Reaktionen bietet die allergenspezifische Immuntherapie. Jedoch kommt sie noch viel zu selten zum Einsatz.

Therapiestart mit Blutdrucksenkern erhöht Frakturrisiko

25.04.2024 Hypertonie Nachrichten

Beginnen ältere Männer im Pflegeheim eine Antihypertensiva-Therapie, dann ist die Frakturrate in den folgenden 30 Tagen mehr als verdoppelt. Besonders häufig stürzen Demenzkranke und Männer, die erstmals Blutdrucksenker nehmen. Dafür spricht eine Analyse unter US-Veteranen.

Update Innere Medizin

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.