Twenty-one days post-surgery, the Control, SNL L4 and SNL L5 DRGs were harvested and cryoprotected in 4% paraformaldehyde with 15% sucrose in 0.1 M PBS for 1 h, followed by incubation in 30% sucrose 0.1 M PBS overnight[
49]. Tissues embedded in Tissue-Tek optimal cutting temperature compound (Ted Pella, Inc., Redding, CA) were sectioned (10 μm) with a Leica cryostat (Jung CM 1800; Vienna, Austria), plated onto subbed slides (Superfrost Plus Gold; Fisher Scientific, Pittsburgh, PA), and post-fixed in 4% paraformaldehyde with 4% sucrose for 10 min. After blocking with 10% normal goat serum for 1 h at room temperature, the tissue was incubated overnight with anti-σ1R rabbit polyclonal antibody (1:100, Invitrogen, same antibody used Western)[
77]. After four washes with PBST, sections were incubated with Alexa Fluor 568 Goat anti-rabbit antibody (1:500; Invitrogen, Camarillo, CA) for 2 h. To determine co-localization of σ1R with the neuron-specific nuclear protein (NeuN), neurofilament 200 (NF-200), CGRP, and glutamine synthetase, the sections were washed four times with PBST followed by incubated with anti-NeuN mouse monoclonal antibody (1:100, Millipore, Billerica, MA, catalog number MAB377, Lot No. LV1616015, monoclonal antibody raised against purified cell nuclei from mouse brain)[
45], anti-NF-200 mouse monoclonal antibody (1:1000, Abcam, Cambridge, UK, catalog number ab28029, monoclonal antibody raised against a non phosphorylated epitope from 200kD Neurofilament Heavy of most mammalian species)[
49], anti-CGRP mouse polyclonal antibody (1:50, Santa Cruz Biotechnology, Santa Cruz, CA, catalog number SC-28920, Lot No. H1407, epitope corresponding to amino acid 81-128 mapping at the C-terminus of CGRP of human origin)[
49], or anti-glutamine synthetase rabbit polyclonal antibody (1:500, Santa Cruz Biotechnology, Santa Cruz, CA, catalog number SC-6640, Lot No. H1407, polyclonal affinity purified antibody raised against a peptide mapping at the C-terminus of glutamine synthetase of human origin)[
45] for 2 h. Following four washes with PBST, sections were incubated with Alexa Fluor 488 goat anti-mouse antibody or Alexa Fluor 488 goat anti-rabbit antibody (1:1000; Molecular Probes, Camarillo, CA) for 1 h. To determine co-localization of σ1R with IB4, sections were incubated with Alexa Fluor 488 conjugate IB
4 (1:50, Invitrogen, Camarillo, CA, catalog number I21411, Lot No. 743633,)[
78] after four washes with PBST. Sections were washed four times with PBST and covered with Prolong Gold Antifade mounting medium (Invitrogen, Camarillo, CA). Sections were examined by confocal microscopy. The expression level of σ1R protein was represented by the image intensity that was captured using standardized camera parameters (Metamorph, Downingtown, PA), and cell area was determined by outlining the neuronal profile by excluding its nucleus. A neuron was considered positive when intensity in cells of interest was two-fold greater than in background in sections incubated without targeting primary antibody. At least 3 sections from each DRG were randomly chosen for fluorescence intensity measurement, except in a case of SNL L5 DRG with σ1R/CGRP double staining, for which 2 sections were evaluated. The fluorescence intensity of all cells in the section was quantified. The individual who measured the fluorescence intensity was not completely blinded to the treatment due to obvious markers of axotomy such as eccentric location of the nucleus. Average fluorescence intensity of neurons was measured in traced cytoplasmic areas of interest after subtracting background fluorescence[
49,
79]. Satellite glial cell σ1R average intensity was derived by creating a mask from a thresholded image of glutamine synthetase immunofluorescence to isolate areas of interest in the image of σ1R immunofluorescence using Photoshop (Adobe Systems Inc., New York City, NY).