Background
Methods
Cell lines and cell culture
Generation of CRISPR/Cas9 knockout cell lines
Expression constructs
Co-immunoprecipitation
Flow cytometry
Quantification of DNA-synthesis by EdU incorporation
Gene expression analysis
Immunofluorescence staining of prostate sections from transgenic mice
Kinase assay
Microscopic analysis
Optical pulse-chase experiments with Dendra2
Determination of protein turnover using cycloheximide
Reporter gene assay
Western blotting
Statistical analysis
Key resources table
CHEMICALS AND REAGENTS | ||
BMS-34A3:C22 | Sigma-Aldrich, Vienna, Austria | Cat#: B9935 |
32P-γ-ATP | Hartmann Analytic, Braunschweig, Germany | Cat#: SRP-301H |
ANTI-FLAG M2 AFFINITY GEL | Thermo Scientific, Vienna, Austria | Cat#: A2220 |
Benzonase, Nuclease | Sigma-Aldrich, Vienna, Austria | Cat#: E1014-5KU |
CFSE Cell Division Tracker Kit | BioLegend, CA, USA | Cat#: 423801 |
cOmplete,Protease Inhibitor Cocktail | Roche, Vienna, Austria | Cat#: 11836170001 |
Dynabeads | Thermo Scientific, Vienna, Austria | Cat#: 1002D |
EdU HTS Kit 555 | Sigma-Aldrich, Vienna, Austria | Cat#: BCK-HTS555 |
FxCycle Violet Stain | Thermo Scientific, Vienna, Austria | Cat#: F10347 |
Nano-Glo Luciferase Assay System | Promega, Mannheim, Germany | Cat#: N1110 |
NeutrAvidin-coated strips | Pierce, Thermo Scientific, Vienna, Austria | Cat#: 15127 |
PhastGel | Thermo Scientific, Vienna, Austria | Cat#: 10734927 |
PVDF-Membran | Roth, Karlsruhe, Germany | Cat#: T830.1 |
Pyrex(R) cloning cylinder | Sigma-Aldrich, Vienna, Austria | Cat#: CLS31666-125EA |
QuikChange mutagenesis kit | Stratagene, Santa Clara, CA | Cat#: 200518 |
Recombinant Human Proto-oncogene c-Myc | RayBiotech, Georgia, USA | Cat#: RB-230-00580-50 |
Skim Milk Powder | Sigma-Aldrich, Vienna, Austria | Cat#: 70166 |
SYTOX Green Nucleic Acid Stain | Thermo Scientific, Vienna, Austria | Cat#: S7020 |
TNFα | Bio-Techne Ltd., Minnesota, USA | Cat#: 210-TA-020 |
TurboFect | Thermo Scientific, Vienna, Austria | Cat#: R0531 |
WesternBright Chemilumineszenz Substrat | Biozym, Vienna, Austria | Cat#: 541021 |
ANTIBODIES | ||
Anti-mouse IgG, HRP-linked Antibody (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 7076; RRID: AB_330924 |
Anti-rabbit IgG, HRP-linked Antibody (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 7074; RRID: AB_2099233 |
APC Annexin V (1:50) | BioLegend, CA, USA | Cat#: 640920 |
c-Myc/N-Myc (D3N8F) Rabbit mAb (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 13987; RRID: AB_2631168 |
Donkey Anti-Mouse IgG H&L (Dylight 550) (1:200) | Abcam, Cambridge, UK | Cat#: ab98795; RRID: AB_10675196 |
Donkey Anti-Rabbit IgG H&L (DyLight 650) (1:200) | Abcam, Cambridge, UK | Cat#: ab96922; RRID: AB_10680408 |
GAPDH (D16H11) XP® Rabbit mAb (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 5174; RRID: AB_10622025 |
GSK-3β (D5C5Z) XP® Rabbit mAb (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 12456; RRID: AB_2636978 |
IKKα (3G12) Mouse mAb (1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 11930; RRID: AB_2687618 |
IKKα (B-8) mouse (1:50) | Santa Cruz, CA, USA | Cat#: sc-7606; RRID: AB_627784 |
IKKα (D3W6N) Rabbit mAb (1:200) | Cell Signaling Technology, Frankfurt, Germany | Cat#: 61294; RRID: AB_2799606 |
IKKβ (D30C6) Rabbit mAb (IF 1:100, WB 1:1000) | Cell Signaling Technology, Frankfurt, Germany | Cat#: RRID: AB_11024092 |
Phospho-c-Myc (Ser62) Polyclonal, IgG, Rabbit (1:200) | Amsbio, Abington, UK | AMS.E-AB-21265 |
Phospho-c-Myc (Thr58) Polyclonal, IgG, Rabbit (1:200) | Amsbio, Abington, UK | AMS.E-AB-20845 |
ENZYMES | ||
BamHI | New England Biolabs, Frankfurt, Germany | Cat#: R3136 |
BbsI | New England Biolabs, Frankfurt, Germany | Cat#: R3539 |
HindIII | New England Biolabs, Frankfurt, Germany | Cat#: R3104 |
NheI | New England Biolabs, Frankfurt, Germany | Cat#: R3131 |
XbaI | New England Biolabs, Frankfurt, Germany | Cat#: R0145 |
Q5 High-Fidelity DNA Polymerase | New England Biolabs, Frankfurt, Germany | Cat#: M0491S |
PLASMIDS | ||
pNL1.1 [Nluc] Vector | Promega, Mannheim, Germany | Cat#: N1001 |
pcDNA3 | Invitrogen, A, USA | Cat#: discontinued |
pEGFP-C1 | Clonetech (now Takara Bio), CA, USA | Cat#: discontinued |
pEYFP-C1 | Clonetech (now Takara Bio), CA, USA | Cat#: discontinued |
pmDsRed-C1 | Clonetech (now Takara Bio), CA, USA | Cat#: discontinued |
pSpCas9(BB)-2A-Puro (PX459) V2.0 | Addgene, Massachusetts, USA | Cat#: 62988; RRID: Addgene_62,988 |
PUB6/V5-His/LacZ | Thermo Scientific, Vienna, Austria | Cat#: V25020 |
SOFTWARE | ||
CytExpert | Beckman Coulter, Vienna, Austria | RRID:SCR_017217 |
Genevestigator | Nebion AG, Zurich, Switzerland | RRID:SCR_002358 |
Graphpad Prism | GraphPad Software, CA, USA | RRID:SCR_002798 |
ImageJ/Fiji | Open source | RRID: SCR_003070 |