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Erschienen in: International Journal of Computer Assisted Radiology and Surgery 2/2018

31.08.2017 | Review Article

Breast cancer cell nuclei classification in histopathology images using deep neural networks

verfasst von: Yangqin Feng, Lei Zhang, Zhang Yi

Erschienen in: International Journal of Computer Assisted Radiology and Surgery | Ausgabe 2/2018

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Abstract

Purpose

Cell nuclei classification in breast cancer histopathology images plays an important role in effective diagnose since breast cancer can often be characterized by its expression in cell nuclei. However, due to the small and variant sizes of cell nuclei, and heavy noise in histopathology images, traditional machine learning methods cannot achieve desirable recognition accuracy. To address this challenge, this paper aims to present a novel deep neural network which performs representation learning and cell nuclei recognition in an end-to-end manner.

Methods

The proposed model hierarchically maps raw medical images into a latent space in which robustness is achieved by employing a stacked denoising autoencoder. A supervised classifier is further developed to improve the discrimination of the model by maximizing inter-subject separability in the latent space. The proposed method involves a cascade model which jointly learns a set of nonlinear mappings and a classifier from the given raw medical images. Such an on-the-shelf learning strategy makes obtaining discriminative features possible, thus leading to better recognition performance.

Results

Extensive experiments with benign and malignant breast cancer datasets are conducted to verify the effectiveness of the proposed method. Better performance was obtained when compared with other feature extraction methods, and higher recognition rate was achieved when compared with other seven classification methods.

Conclusions

We propose an end-to-end DNN model for cell nuclei and non-nuclei classification of histopathology images. It demonstrates that the proposed method can achieve promising performance in cell nuclei classification, and the proposed method is suitable for the cell nuclei classification task.
Fußnoten
1
The BCC database is downloaded from the website at http://​bioimage.​ucsb.​edu/​research/​bio-segmentation.
 
Literatur
1.
Zurück zum Zitat Basavanhally A, Xu J, Madabhushi A, Ganesan S (2009) Computer-aided prognosis of er+ breast cancer histopathology and correlating survival outcome with oncotype dx assay. In: IEEE international symposium on Biomedical imaging: from nano to macro (ISBI’09). IEEE pp 851–854 Basavanhally A, Xu J, Madabhushi A, Ganesan S (2009) Computer-aided prognosis of er+ breast cancer histopathology and correlating survival outcome with oncotype dx assay. In: IEEE international symposium on Biomedical imaging: from nano to macro (ISBI’09). IEEE pp 851–854
3.
Zurück zum Zitat Chen X, Zhou X, Wong ST (2006) Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans Biomed Eng 53(4):762–766CrossRefPubMed Chen X, Zhou X, Wong ST (2006) Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans Biomed Eng 53(4):762–766CrossRefPubMed
4.
Zurück zum Zitat Cirean DC, Giusti A, Gambardella LM, Schmidhuber J (2013) Mitosis detection in breast cancer histology images with deep neural networks. Springer, Berlin, pp 411–418 Cirean DC, Giusti A, Gambardella LM, Schmidhuber J (2013) Mitosis detection in breast cancer histology images with deep neural networks. Springer, Berlin, pp 411–418
5.
Zurück zum Zitat Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood from incomplete data via the EM algorithm. J Roy Stat Soc B 39(1):1–38 Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood from incomplete data via the EM algorithm. J Roy Stat Soc B 39(1):1–38
6.
Zurück zum Zitat Fatakdawala H, Xu J, Basavanhally A, Bhanot G, Ganesan S, Feldman M, Tomaszewski JE, Madabhushi A (2010) Expectation maximization-driven geodesic active contour with overlap resolution (emagacor): application to lymphocyte segmentation on breast cancer histopathology. IEEE Trans Biomed Eng 57(7):1676–1689CrossRefPubMed Fatakdawala H, Xu J, Basavanhally A, Bhanot G, Ganesan S, Feldman M, Tomaszewski JE, Madabhushi A (2010) Expectation maximization-driven geodesic active contour with overlap resolution (emagacor): application to lymphocyte segmentation on breast cancer histopathology. IEEE Trans Biomed Eng 57(7):1676–1689CrossRefPubMed
7.
Zurück zum Zitat Fukunaga K, Hostetler LD (1975) K-nearest-neighbor bayes-risk estimation. IEEE Trans Inf Theory 21(3):285–293CrossRef Fukunaga K, Hostetler LD (1975) K-nearest-neighbor bayes-risk estimation. IEEE Trans Inf Theory 21(3):285–293CrossRef
8.
Zurück zum Zitat Gelasca E.D, Byun J, Obara B, Manjunath B (2008) Evaluation and benchmark for biological image segmentation. In: 15th IEEE International Conference on Image Processing (ICIP 2008). IEEE, pp 1816–1819 Gelasca E.D, Byun J, Obara B, Manjunath B (2008) Evaluation and benchmark for biological image segmentation. In: 15th IEEE International Conference on Image Processing (ICIP 2008). IEEE, pp 1816–1819
9.
Zurück zum Zitat Glorot X, Bengio Y (2010) Understanding the difficulty of training deep feedforward neural networks. Aistats 9:249–256 Glorot X, Bengio Y (2010) Understanding the difficulty of training deep feedforward neural networks. Aistats 9:249–256
10.
Zurück zum Zitat Hatipoglu N, Bilgin G (2014) Classification of histopathological images using convolutional neural network. In: 2014 4th international conference on image processing theory, tools and applications (IPTA). IEEE, pp 1–6 Hatipoglu N, Bilgin G (2014) Classification of histopathological images using convolutional neural network. In: 2014 4th international conference on image processing theory, tools and applications (IPTA). IEEE, pp 1–6
11.
Zurück zum Zitat Hinton GE, Osindero S, Teh YW (2006) A fast learning algorithm for deep belief nets. Neural Comput 18(7):1527–1554CrossRefPubMed Hinton GE, Osindero S, Teh YW (2006) A fast learning algorithm for deep belief nets. Neural Comput 18(7):1527–1554CrossRefPubMed
12.
Zurück zum Zitat Huang PW, Lee CH (2009) Automatic classification for pathological prostate images based on fractal analysis. IEEE Trans Med Imag 28(7):1037–1050CrossRef Huang PW, Lee CH (2009) Automatic classification for pathological prostate images based on fractal analysis. IEEE Trans Med Imag 28(7):1037–1050CrossRef
13.
Zurück zum Zitat Kowal M (2014) Computer-aided diagnosis for breast tumor classification using microscopic images of fine needle biopsy. Springer, Berlin, pp 213–224 Kowal M (2014) Computer-aided diagnosis for breast tumor classification using microscopic images of fine needle biopsy. Springer, Berlin, pp 213–224
14.
Zurück zum Zitat Kullback S, Leibler RA (1951) On information and sufficiency. Anna Math Stat 22(1):79–86CrossRef Kullback S, Leibler RA (1951) On information and sufficiency. Anna Math Stat 22(1):79–86CrossRef
15.
Zurück zum Zitat Larochelle H, Erhan D, Courville A, Bergstra J, Bengio Y (2007) An empirical evaluation of deep architectures on problems with many factors of variation. In: Proceedings of the 24th international conference on Machine learning. ACM, pp 473–480 Larochelle H, Erhan D, Courville A, Bergstra J, Bengio Y (2007) An empirical evaluation of deep architectures on problems with many factors of variation. In: Proceedings of the 24th international conference on Machine learning. ACM, pp 473–480
16.
Zurück zum Zitat LeCun Y, Jackel L, Bottou L, Brunot A, Cortes C, Denker J, Drucker H, Guyon I, Muller U, Sackinger E (1995) Comparison of learning algorithms for handwritten digit recognition. In: International conference on artificial neural networks, vol 60. pp 53–60 LeCun Y, Jackel L, Bottou L, Brunot A, Cortes C, Denker J, Drucker H, Guyon I, Muller U, Sackinger E (1995) Comparison of learning algorithms for handwritten digit recognition. In: International conference on artificial neural networks, vol 60. pp 53–60
17.
18.
Zurück zum Zitat Lowe DG (2004) Distinctive image features from scale-invariant keypoints. Int J Comput Vis 60(2):91–110CrossRef Lowe DG (2004) Distinctive image features from scale-invariant keypoints. Int J Comput Vis 60(2):91–110CrossRef
19.
Zurück zum Zitat McLachlan G (2004) Discriminant analysis and statistical pattern recognition. Wiley, Hoboken McLachlan G (2004) Discriminant analysis and statistical pattern recognition. Wiley, Hoboken
20.
Zurück zum Zitat Naik S, Doyle S, Agner S, Madabhushi A, Feldman M, Tomaszewski J (2008) Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology. In: 5th IEEE international symposium on biomedical imaging: from nano to macro (ISBI 2008). IEEE, pp 284–287 Naik S, Doyle S, Agner S, Madabhushi A, Feldman M, Tomaszewski J (2008) Automated gland and nuclei segmentation for grading of prostate and breast cancer histopathology. In: 5th IEEE international symposium on biomedical imaging: from nano to macro (ISBI 2008). IEEE, pp 284–287
21.
Zurück zum Zitat Ojansivu V, Linder N, Rahtu E, Pietikinen M, Lundin M, Joensuu H, Lundin J (2013) Automated classification of breast cancer morphology in histopathological images. Diagn Pathol 8(1):1–4 Ojansivu V, Linder N, Rahtu E, Pietikinen M, Lundin M, Joensuu H, Lundin J (2013) Automated classification of breast cancer morphology in histopathological images. Diagn Pathol 8(1):1–4
22.
Zurück zum Zitat Pang B, Zhang Y, Chen Q, Gao Z, Peng Q, You X Cell nucleus segmentation in color histopathological imagery using convolutional networks. In: 2010 Chinese conference on pattern recognition (CCPR). IEEE, pp 1–5 Pang B, Zhang Y, Chen Q, Gao Z, Peng Q, You X Cell nucleus segmentation in color histopathological imagery using convolutional networks. In: 2010 Chinese conference on pattern recognition (CCPR). IEEE, pp 1–5
23.
Zurück zum Zitat Peng X, Yi Z, Tang H (2015) Robust subspace clustering via thresholding ridge regression. In: AAAI, pp 3827–3833 Peng X, Yi Z, Tang H (2015) Robust subspace clustering via thresholding ridge regression. In: AAAI, pp 3827–3833
24.
Zurück zum Zitat Peng X, Zhao B, Yan R, Tang H, Yi Z (2016) Bag of events: an efficient probability-based feature extraction method for aer image sensors. IEEE Trans Neural Netw Learn Syst 99:1–13 Peng X, Zhao B, Yan R, Tang H, Yi Z (2016) Bag of events: an efficient probability-based feature extraction method for aer image sensors. IEEE Trans Neural Netw Learn Syst 99:1–13
25.
Zurück zum Zitat Poultney C, Chopra S, Cun Y.L (2007) Efficient learning of sparse representations with an energy-based model. In: Advances in neural information processing systems, pp 1137–1144 Poultney C, Chopra S, Cun Y.L (2007) Efficient learning of sparse representations with an energy-based model. In: Advances in neural information processing systems, pp 1137–1144
26.
Zurück zum Zitat Ranzato MA, Huang FJ, Boureau YL, LeCun Y (2007) Unsupervised learning of invariant feature hierarchies with applications to object recognition. In: IEEE conference on computer vision and pattern recognition (CVPR’07). IEEE, pp 1–8 Ranzato MA, Huang FJ, Boureau YL, LeCun Y (2007) Unsupervised learning of invariant feature hierarchies with applications to object recognition. In: IEEE conference on computer vision and pattern recognition (CVPR’07). IEEE, pp 1–8
27.
Zurück zum Zitat Schlkopf B, Smola A, Mller KR (1997) Kernel principal component analysis. Springer, Berlin, pp 583–588 Schlkopf B, Smola A, Mller KR (1997) Kernel principal component analysis. Springer, Berlin, pp 583–588
28.
Zurück zum Zitat Schmah T, Hinton G.E, Small S.L, Strother S, Zemel R.S (2009) Generative versus discriminative training of RBMS for classification of fmri images. In: Advances in neural information processing systems. pp 1409–1416 Schmah T, Hinton G.E, Small S.L, Strother S, Zemel R.S (2009) Generative versus discriminative training of RBMS for classification of fmri images. In: Advances in neural information processing systems. pp 1409–1416
29.
Zurück zum Zitat Scholkopf B, Smola AJ (2001) Learning with kernels: support vector machines, regularization, optimization, and beyond. MIT press, Cambridge Scholkopf B, Smola AJ (2001) Learning with kernels: support vector machines, regularization, optimization, and beyond. MIT press, Cambridge
30.
Zurück zum Zitat Sertel O, Kong J, Shimada H, Catalyurek U, Saltz JH, Gurcan MN (2009) Computer-aided prognosis of neuroblastoma on whole-slide images: classification of stromal development. Pattern recognition 42(6):1093–1103CrossRefPubMedPubMedCentral Sertel O, Kong J, Shimada H, Catalyurek U, Saltz JH, Gurcan MN (2009) Computer-aided prognosis of neuroblastoma on whole-slide images: classification of stromal development. Pattern recognition 42(6):1093–1103CrossRefPubMedPubMedCentral
31.
Zurück zum Zitat Shin HC, Orton MR, Collins DJ, Doran SJ, Leach MO (2013) Stacked autoencoders for unsupervised feature learning and multiple organ detection in a pilot study using 4D patient data. IEEE Trans Pattern Anal Mach Intell 35(8):1930–1943CrossRefPubMed Shin HC, Orton MR, Collins DJ, Doran SJ, Leach MO (2013) Stacked autoencoders for unsupervised feature learning and multiple organ detection in a pilot study using 4D patient data. IEEE Trans Pattern Anal Mach Intell 35(8):1930–1943CrossRefPubMed
32.
Zurück zum Zitat Shin M, Jang D, Nam H, Lee K.H., Lee D (2016) Predicting the absorption potential of chemical compounds through a deep learning approach. IEEE/ACM Trans Comput Biol Bioinf 99:1. doi:10.1109/TCBB.2016.2535233 Shin M, Jang D, Nam H, Lee K.H., Lee D (2016) Predicting the absorption potential of chemical compounds through a deep learning approach. IEEE/ACM Trans Comput Biol Bioinf 99:1. doi:10.​1109/​TCBB.​2016.​2535233
34.
Zurück zum Zitat Szegedy C, Liu W, Jia Y, Sermanet P, Reed S, Anguelov D, Erhan D, Vanhoucke V, Rabinovich A (2015) Going deeper with convolutions. In: Proceedings of the IEEE conference on computer vision and pattern recognition. pp 1–9 Szegedy C, Liu W, Jia Y, Sermanet P, Reed S, Anguelov D, Erhan D, Vanhoucke V, Rabinovich A (2015) Going deeper with convolutions. In: Proceedings of the IEEE conference on computer vision and pattern recognition. pp 1–9
35.
Zurück zum Zitat Vapnik VN, Vapnik V (1998) Statistical learning theory, vol 1. Wiley, New York Vapnik VN, Vapnik V (1998) Statistical learning theory, vol 1. Wiley, New York
36.
Zurück zum Zitat Vincent P, Larochelle H, Bengio Y, Manzagol P.A Extracting and composing robust features with denoising autoencoders. In: Proceedings of the 25th international conference on machine learning. ACM, pp 1096–1103 Vincent P, Larochelle H, Bengio Y, Manzagol P.A Extracting and composing robust features with denoising autoencoders. In: Proceedings of the 25th international conference on machine learning. ACM, pp 1096–1103
37.
Zurück zum Zitat Vincent P, Larochelle H, Lajoie I, Bengio Y, Manzagol PA (2010) Stacked denoising autoencoders: learning useful representations in a deep network with a local denoising criterion. J Mach Learn Res 11:3371–3408 Vincent P, Larochelle H, Lajoie I, Bengio Y, Manzagol PA (2010) Stacked denoising autoencoders: learning useful representations in a deep network with a local denoising criterion. J Mach Learn Res 11:3371–3408
38.
Zurück zum Zitat Xu J, Xiang L, Hang R, Wu J (2014) Stacked sparse autoencoder (ssae) based framework for nuclei patch classification on breast cancer histopathology. In: 2014 IEEE 11th international symposium on biomedical imaging (ISBI). IEEE, pp 999–1002 Xu J, Xiang L, Hang R, Wu J (2014) Stacked sparse autoencoder (ssae) based framework for nuclei patch classification on breast cancer histopathology. In: 2014 IEEE 11th international symposium on biomedical imaging (ISBI). IEEE, pp 999–1002
39.
Zurück zum Zitat Xu J, Xiang L, Liu Q, Gilmore H, Wu J, Tang J, Madabhushi A (2016) Stacked sparse autoencoder (ssae) for nuclei detection on breast cancer histopathology images. IEEE Trans Med Imag 35(1):119–130CrossRef Xu J, Xiang L, Liu Q, Gilmore H, Wu J, Tang J, Madabhushi A (2016) Stacked sparse autoencoder (ssae) for nuclei detection on breast cancer histopathology images. IEEE Trans Med Imag 35(1):119–130CrossRef
40.
Zurück zum Zitat Zhang Z, Lyons M, Schuster M, Akamatsu S (1998) Comparison between geometry-based and gabor-wavelets-based facial expression recognition using multi-layer perceptron. In: 1998 proceedings third IEEE international conference on automatic face and gesture recognition. IEEE, pp 454–459 Zhang Z, Lyons M, Schuster M, Akamatsu S (1998) Comparison between geometry-based and gabor-wavelets-based facial expression recognition using multi-layer perceptron. In: 1998 proceedings third IEEE international conference on automatic face and gesture recognition. IEEE, pp 454–459
Metadaten
Titel
Breast cancer cell nuclei classification in histopathology images using deep neural networks
verfasst von
Yangqin Feng
Lei Zhang
Zhang Yi
Publikationsdatum
31.08.2017
Verlag
Springer International Publishing
Erschienen in
International Journal of Computer Assisted Radiology and Surgery / Ausgabe 2/2018
Print ISSN: 1861-6410
Elektronische ISSN: 1861-6429
DOI
https://doi.org/10.1007/s11548-017-1663-9

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