Introduction
Materials and methods
Bacterial strains and cultivation
Strain number | Hospital | Department | Patient age (years) | Patient sex | Isolation date | Isolation site |
---|---|---|---|---|---|---|
1830 | Olomouc | Paediatrics | <1 | Male | 09/05/2007 | Throat swab |
1829 | Olomouc | Paediatrics | 1 | Male | 04/06/2007 | Throat swab |
1828 | Olomouc | Paediatrics | 2 | Male | 12/10/2007 | Nose swab |
1831 | Olomouc | Paediatrics | 3 | Male | 06/06/2007 | Throat swab |
1832 | Olomouc | Paediatrics | 3 | Female | 27/03/2009 | Throat swab |
1999 | Olomouc | Paediatrics | 3 | Male | 30/01/2013 | Throat swab |
2020 | Olomouc | Paediatrics | 5 | Female | 26/05/2013 | Stool |
1835 | Olomouc | Paediatrics | 6 | Male | 30/03/2012 | Throat swab |
2015 | Olomouc | Paediatrics | 7 | Female | 16/08/2013 | Throat swab |
2014 | Olomouc | Paediatrics | 8 | Male | 08/04/2013 | Throat swab |
1917 | Olomouc | Paediatrics | 15 | Male | 28/10/2012 | Throat swab |
1834 | Olomouc | Paediatrics | 16 | Male | 31/05/2010 | Throat swab |
2004 | Olomouc | Paediatrics | 17 | Female | 02/03/2013 | Throat swab |
1827 | Olomouc | Internal Medicine III | 76 | Female | 09/10/2007 | Cannula |
1833 | Olomouc | CMPa
| 5 | Male | 11/01/2010 | Stool |
1838 | Olomouc | AICUb
| 63 | Female | 10/04/2012 | Sputum |
1998 | Prostějov | Internal Medicine (A) | 49 | Female | 22/01/2013 | Sputum |
2008 | Prostějov | Internal Medicine (A) | 68 | Male | 12/03/2013 | Sputum |
2011 | Prostějov | Internal Medicine (A) | 68 | Male | 31/03/2013 | USCd
|
2006 | Prostějov | Internal Medicine (A) | 70 | Female | 28/02/2013 | Sputum |
2007 | Prostějov | Internal Medicine (A) | 70 | Female | 06/03/2013 | Sputum |
2022 | Prostějov | Internal Medicine (A) | 70 | Female | 06/03/2013 | Sputum |
1842 | Prostějov | Internal Medicine (A) | 72 | Female | 27/06/2012 | Sputum |
2005 | Prostějov | Internal Medicine (A) | 73 | Female | 24/02/2013 | Sputum |
2021 | Prostějov | Internal Medicine (A) | 76 | Female | 07/04/2013 | Sputum |
1841 | Prostějov | Internal Medicine (A) | 79 | Female | 18/06/2012 | Sputum |
2003 | Prostějov | Internal Medicine (A) | 83 | Male | 20/02/2013 | Sputum |
1915 | Prostějov | Internal Medicine (A) | 84 | Female | 18/10/2012 | Sputum |
1996 | Prostějov | Internal Medicine (A) | 84 | Female | 14/01/2013 | Sputum |
2010 | Prostějov- | Internal Medicine (A) | 84 | Female | 12/03/2013 | Throat swab |
2019 | Prostějov | Internal Medicine (A) | 87 | Male | 10/05/2013 | Sputum |
2001 | Prostějov | Internal Medicine (B) | 68 | Male | 29/01/2013 | SOCe
|
2000 | Prostějov | Internal Medicine (B) | 71 | Male | 03/02/2013 | Rectal Swab |
2002 | Prostějov | Internal Medicine (B) | 77 | Male | 19/02/2013 | Sputum |
1916 | Prostějov | Internal Medicine (B) | 84 | Male | 06/11/2012 | Sputum |
2013 | Prostějov | Internal Medicine (B) | 91 | Female | 04/04/2013 | Sputum |
2012 | Prostějov | Internal Medicine (C) | 70 | Male | 04/04/2013 | Sputum |
2009 | Prostějov | Internal Medicine (C) | 77 | Female | 16/03/2013 | Tongue swab |
1903 | Prostějov | Internal Medicine—ICU | 59 | Male | 24/08/2012 | Sputum |
1902 | Prostějov | Internal Medicine—ICU | 69 | Male | 21/08/2012 | Sputum |
1901 | Prostějov | Internal Medicine—ICU | 82 | Male | 15/08/2012 | Sputum |
1997 | Prostějov | ICUc
| 65 | Male | 21/01/2013 | Sputum |
1839 | Prostějov | ICU | 73 | Female | 12/06/2012 | SPEGf
|
1840 | Prostějov | ICU | 80 | Female | 19/06/2012 | Sputum |
1836 | Prostějov | Surgery | 63 | Male | 23/05/2012 | Wound swab |
1837 | Prostějov | Surgery | 85 | Female | 25/05/2012 | Wound swab |
1914 | Prostějov | Infectious Diseases | 69 | Male | 02/10/2012 | Sputum |
2018 | Prostějov | Infectious Diseases | 72 | Male | 05/05/2013 | Sputum |
2016 | Prostějov | AICU | 27 | Male | 18/04/2013 | Sputum |
2017 | Prostějov | AICU | 27 | Male | 22/04/2013 | Sputum |
1995 | Prostějov | Outpatient | 50 | Male | 10/01/2013 | Sputum |
Phenotyping
PFGE of Cronobacter isolates
Molecular serotyping of Cronobacter O-antigens
DNA extraction
rpoB allele sequence analysis
MLST
Results
Hospital | Department | Number of Cronobacter strains isolated |
---|---|---|
Olomouc | Paediatrics | 13 |
Internal Medicine | 1 | |
AICUa
| 1 | |
Pathology | 1 | |
Prostějov | Internal Medicine | 22 |
Internal Medicine—ICUb
| 3 | |
Surgery | 2 | |
ICU | 3 | |
Infectious Diseases | 2 | |
AICU | 2 | |
Outpatient | 1 | |
Total | 51 |
Strain | Hospital | Species | Pulsotype |
rpoB allele |
fusA allele | Serotype | Sequence type |
---|---|---|---|---|---|---|---|
2021 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2022 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1901 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1915 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1996 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1837 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1841 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1842 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2003 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2005 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2007 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2010 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2016 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2019 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
2017 | Prostějov |
C. sakazakii
| 12 | 1 | 1 | CS O:2 | ST4 |
1916 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
1840 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
2000 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
2001 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
2002 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
2009 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
2011 | Prostějov |
C. sakazakii
| 7 | 1 | 1 | CS O:2 | ST4 |
1917 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
1999 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
2004 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
2015 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
2014 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
2020 | Olomouc |
C. malonaticus
| 4 | 18 | 7 | CMal O:2 | ST7 |
1828 | Olomouc |
C. malonaticus
| 5 | 18 | 7 | CMal O:2 | ST7 |
1829 | Olomouc |
C. malonaticus
| 5 | 18 | 7 | CMal O:2 | ST7 |
1830 | Olomouc |
C. malonaticus
| 5 | 18 | 7 | CMal O:2 | ST7 |
1831 | Olomouc |
C. malonaticus
| 5 | 18 | 7 | CMal O:2 | ST7 |
1832 | Olomouc |
C. malonaticus
| 5 | 18 | 7 | CMal O:2 | ST7 |
1903 | Prostějov |
C. sakazakii
| 10 | 1 | 1 | CS O:2 | ST4 |
1998 | Prostějov |
C. sakazakii
| 10 | 1 | 1 | CS O:2 | ST4 |
2006 | Prostějov |
C. sakazakii
| 10 | 1 | 1 | CS O:2 | ST4 |
2008 | Prostějov |
C. sakazakii
| 10 | 1 | 1 | CS O:2 | ST4 |
1833 | Olomouc |
C. malonaticus
| 3 | 18 | 7 | CMal O:2 | ST7 |
1834 | Olomouc |
C. malonaticus
| 3 | 18 | 7 | CMal O:2 | ST7 |
1835 | Olomouc |
C. malonaticus
| 3 | 18 | 7 | CMal O:2 | ST7 |
1902 | Prostějov |
C. sakazakii
| 11 | 1 | 1 | CS O:2 | ST4 |
1997 | Prostějov |
C. sakazakii
| 11 | 1 | 1 | CS O:2 | ST4 |
1914 | Prostějov |
C. malonaticus
| 1 | 18 | 7 | CMal O:2 | ST7 |
2018 | Prostějov |
C. malonaticus
| 1 | 18 | 7 | CMal O:2 | ST7 |
1827 | Olomouc |
C. malonaticus
| 2 | 18 | 7 | CMal O:2 | ST7 |
2013 | Prostějov |
C. sakazakii
| 8 | 1 | 1 | CS O:2 | ST4 |
2012 | Prostějov |
C. sakazakii
| 9 | 1 | 1 | CS O:2 | ST4 |
1839 | Prostějov |
C. sakazakii
| 13 | 1 | 1 | CS O:2 | ST4 |
1836 | Prostějov |
C. sakazakii
| 14 | 1 | 1 | CS O:2 | ST4 |
1995 | Prostějov |
C. sakazakii
| 15 | 35 | 8 | CS O:2 | ST64 |
1838 | Olomouc |
C. muytjensii
| 6 | 36 | 24 | No PCR product | ST28 |
Cronobacter species | Sequence type | No. of isolates (%) | Pulsotype (n) | Hospital | Period of isolation | Age (years) | Sex | Source (n) | |
---|---|---|---|---|---|---|---|---|---|
Male | Female | ||||||||
C. sakazakii
| ST4 | 32 (63) | 12 (15), 7 (7), 10 (4), 11 (2), 8 (1), 9 (1), 13 (1), 14 (1) | Prostějov | 12/06/12–10/05/13 | >27 | 16 | 16 | Sputum (24), wound swab (2), section catheter (1), tongue swab (1), throat swab (1), oral cavity (1), rectal swab (1), SPEGa (1) |
C. sakazakii
| ST64 | 1 (2) | 15 (1) | Prostějov | 10/01/2013 | 50 | 1 | 0 | Sputum (1) |
C. malonaticus
| ST7 | 17 (33) | 4 (6), 5 (5), 3 (3), 2 (1) | Olomouc | 06/05/07–16/08/13 | <1 to 76 | 12 | 5 | Throat swab (11), faecal material (2), cannula (1), nasal swab (1) |
1 (2) | Prostějov | 2/10/2012 & 5/05/2013 | 69 and 72 | 2 | 0 | Sputum (2) | |||
C. muytjensii
| ST28 | 1 (2) | 6 (1) | Olomouc | 10/04/2012 | 63 | 0 | 1 | Sputum (1) |
Total | 51 | 6 years | 29 | 22 |