Background
Patients and methods
Patients
Gene-expression profiling
Statistical analysis
Results
Correlation analysis of miR-25 expression and clinical characteristics
Characteristic | Chemotherapy group | Allo-HSCT group | ||||
---|---|---|---|---|---|---|
High miR-25 (n = 45) | Low miR-25 (n = 45) |
P
| High miR-25 (n = 36) | Low miR-25 (n = 36) |
P
| |
Age/years, median | 61.4 (22–82) | 64.4 (31–88) | 0.49 | 47.3 (22–72) | 49.4 (18–69) | 0.535 |
Age group/n (%) (years) | 0.495 | 0.793 | ||||
< 60 | 16 (35.6) | 12 (26.7) | 27 (75) | 25 (69.4) | ||
≥ 60 | 29 (64.4) | 33 (73.3) | 9 (25) | 11 (30.6) | ||
Gender/n (%) | 0.289 | 0.634 | ||||
Male | 22 (48.9) | 28 (62.2) | 22 (61.1) | 19 (52.8) | ||
Female | 23 (51.1) | 17 (37.8) | 14 (38.9) | 17 (47.2) | ||
WBC/× 109/L, median | 32.4 (0.7–297.4) | 51.8 (1.5–298.4) | 0.059 | 36.0 (0.6–223.8) | 39.8 (1.2–118.8) | 0.248 |
BM blast/%, median | 69 (32–99) | 67.2 (30–92) | 0.955 | 66.2 (34–99) | 70.2 (30–100) | 0.277 |
PB blast/%, median | 39.5 (0–98) | 35.1 (0–97) | 0.320 | 46.1 (0–96) | 48.9 (0–94) | 0.752 |
FAB subtypes/n (%) | ||||||
M0 | 4 (8.9) | 4 (8.9) | 1.000 | 6 (16.7) | 3 (8.3) | 0.478 |
M1 | 13 (28.9) | 7 (15.6) | 0.204 | 7 (19.4) | 16 (44.4) | 0.042 |
M2 | 12 (26.7) | 9 (20) | 0.619 | 12 (33.3) | 7 (19.4) | 0.285 |
M4 | 11 (24.4) | 13 (28.9) | 0.812 | 8 (22.2) | 6 (16.7) | 0.767 |
M5 | 4 (8.9) | 9 (20) | 0.230 | 2 (5.6) | 2 (5.6) | 1.000 |
M6 | 1 (2.2) | 0 (0.0) | 1.000 | 0 (0.0) | 1 (2.8) | 1.000 |
M7 | 0 (0.0) | 2 (4.4) | 0.494 | 1 (2.8) | 0 (0.0) | 1.000 |
No date | 0 (0.0) | 1 (2.2) | 1.000 | 0 (0.0) | 1 (2.8) | 1.000 |
Karyotype/n (%) | ||||||
Normal | 18 (40) | 26 (57.8) | 0.140 | 15 (41.7) | 19 (52.7) | 0.479 |
Complex | 5 (11.1) | 7 (15.6) | 0.758 | 6 (16.6) | 6 (16.6) | 1.000 |
Poor | 0 (0.0) | 5 (11.1) | 0.056 | 1 (2.8) | 4 (11.1) | 0.357 |
Intermediate | 8 (17.8) | 2 (4.4) | 0.090 | 6 (16.7) | 3 (8.4) | 0.478 |
MLL | 1 (2.2) | 2 (4.4) | 1.000 | 3 (8.3) | 0 (0.0) | 0.239 |
CBFβ-MYH11 | 6 (13.3) | 1 (2.2) | 0.110 | 4 (11.1) | 1 (2.8) | 0.357 |
BCR-ABL1 | 0 (0.0) | 1 (2.2) | 1.000 | 0 (0.0) | 2 (5.6) | 0.493 |
RUNX1-RUNX1T1 | 6 (13.3) | 0 (0.0) | 0.026 | 1 (2.8) | 0 (0.0) | 1.000 |
N.D. | 1 (2.2) | 1 (2.2) | 1.000 | 0 (0.0) | 1 (2.8) | 1.000 |
Risk(cyto)/n (%) | ||||||
Good | 12 (26.7) | 1 (2.2) | 0.002 | 5 (13.9) | 1 (2.8) | 0.199 |
Intermediate | 26 (57.8) | 29 (64.4) | 0.665 | 21 (58.3) | 20 (55.5) | 1.000 |
Poor | 6 (13.3) | 14 (31.1) | 0.074 | 10 (27.8) | 14 (38.9) | 0.454 |
Other | 1 (2.2) | 1 (2.2) | 1.000 | 0 (0.0) | 1 (2.8) | 1.000 |
FLT3-ITD/n (%) | 0.784 | 0.045 | ||||
Presence | 9 (20.0) | 7 (15.6) | 4 (11.1) | 12 (33.3) | ||
Absence | 36 (80.0) | 38 (84.4) | 32 (88.9) | 24 (66.7) | ||
NPM1/n (%) | 0.175 | 0.064 | ||||
Presence | 11 (24.4) | 18 (40) | 6 (16.7) | 14 (38.9) | ||
Absence | 34 (75.6) | 27 (60) | 36 (83.3) | 22 (61.1) | ||
DNMT3A/n (%) | 0.157 | 1.000 | ||||
Presence | 9 (20) | 16 (35.6) | 9 (25) | 9 (25) | ||
Absence | 36 (80) | 29 (64.6) | 27 (75) | 27 (75) | ||
RUNX1/n (%) | 0.714 | 0.710 | ||||
Presence | 5 (11.1) | 3 (6.7) | 5 (13.9) | 3 (8.3) | ||
Absence | 40 (89.9) | 42 (93.3) | 31 (86.1) | 33 (91.7) | ||
MLL-PTD/n (%) | 1.000 | |||||
Presence | 2 (4.4) | 3 (6.7) | 2 (5.6) | 2 (5.6) | ||
Absence | 43 (95.6) | 42 (93.3) | 34 (94.4) | 34 (94.4) | ||
TP53/n (%) | 0.522 | 1.000 | ||||
Mutation | 4 (8.9) | 7 (15.6) | 2 (5.6) | 2 (5.6) | ||
Wild type | 41 (91.1) | 38 (84.4) | 34 (94.4) | 34 (94.4) | ||
CEBPA/n (%) | 1.000 | 0.055 | ||||
Mutation | 1 (2.2) | 2 (4.4) | 7 (19.4) | 1 (2.8) | ||
Wild type | 44 (97.8) | 43 (95.6) | 29 (80.6) | 35 (97.2) | ||
IDH1/n (%) | 1.000 | 0.514 | ||||
Mutation | 3 (6.7) | 4 (8.9) | 4 (11.1) | 7 (19.4) | ||
Wild type | 42 (93.3) | 41 (91.1) | 32 (88.9) | 29 (80.6) | ||
IDH2/n (%) | 1.000 | 0.260 | ||||
Mutation | 5 (11.1) | 4 (8.9) | 2 (5.6) | 6 (16.7) | ||
Wild type | 40 (88.9) | 41 (91.1) | 34 (94.4) | 30 (83.3) |
Prognostic value of miR-25 profiles in AML patients
High level of miR-25 is independently associated with favorable prognosis
Variables | EFS | OS | ||
---|---|---|---|---|
HR (95% CI) | P-value | HR (95% CI) | P-value | |
Univariate analyses | ||||
MiR-25 (high vs low) | 0.598 (0.376–0.951) | 0.030 | 0.556 (0.347–0.890) | 0.015 |
WBC (< 20 vs ≥ 20 × 109/L) | 0.939 (0.594–1.484) | 0.786 | 0.936 (0.591–1.484) | 0.779 |
FLT3-ITD (positive vs negative) | 1.242 (0.693–2.224) | 0.467 | 1.192 (0.665–2.136) | 0.555 |
NPM1 (mutated vs wild) | 1.168 (0.721–1.893) | 0.527 | 1.044 (0.640–1.704) | 0.862 |
DNMT3A (mutated vs wild) | 1.491 (0.909–2.446) | 0.114 | 1.432 (0.868–2.362) | 0.160 |
RUNX1 (mutated vs wild) | 1.464 (0.700–3.064) | 0.312 | 1.591 (0.759–3.335) | 0.219 |
ITDH1 (mutated vs wild) | 1.043 (0.452–2.405) | 0.922 | 0.908 (0.366–2.254) | 0.836 |
ITDH2 (mutated vs wild) | 0.981 (0.487–1.977) | 0.956 | 0.991 (0.492–1.995) | 0.979 |
Multivariate analyses | ||||
MiR-25 (high vs low) | 0.561 (0.333–0.943) | 0.029 | 0.502 (0.296–0.851) | 0.011 |
WBC (< 20 vs ≥ 20 × 109/L) | 0.884 (0.537–1.456) | 0.629 | 0.927 (0.563–1.527) | 0.766 |
FLT3-ITD (positive vs negative) | 1.489 (0.778–2.848) | 0.229 | 1.578 (0.815–3.054) | 0.176 |
NPM1 (mutated vs wild) | 0.877 (0.476–1.615) | 0.674 | 0.760 (0.411–1.405) | 0.382 |
DNMT3A (mutated vs wild) | 1.421 (0.787–2.568) | 0.244 | 1.416 (0.787–2.550) | 0.246 |
RUNX1 (mutated vs wild) | 1.730 (0.768–3.897) | 0.186 | 1.805 (0.805–4.050) | 0.152 |
ITDH1 (mutated vs wild) | 1.141 (0.448–2.904) | 0.782 | 1.074 (0.397–2.906) | 0.889 |
ITDH2 (mutated vs wild) | 1.039 (0.480–2.251) | 0.922 | 1.042 (0.483–2.248) | 0.916 |
Variables | EFS | OS | ||
---|---|---|---|---|
HR (95% CI) | P-value | HR (95% CI) | P-value | |
Univariate analyses | ||||
MiR-25 (high vs low) | 0.886 (0.553–1.473) | 0.641 | 0.625 (0.364–1.073) | 0.088 |
WBC (< 20 vs ≥ 20 × 109/L) | 1.530 (0.910–2.571) | 0.108 | 0.949 (0.554–1.628) | 0.851 |
FLT3-ITD (positive vs negative) | 1.873 (1.020–3.437) | 0.043 | 1.998 (1.053–3.788) | 0.034 |
NPM1 (mutated vs wild) | 0.913 (0.515–1.619) | 0.755 | 0.879 (0.478–1.617) | 0.678 |
DNMT3A (mutated vs wild) | 1.106 (0.615–1.989) | 0.737 | 1.269 (0.686–2.347) | 0.447 |
RUNX1 (mutated vs wild) | 1.375 (0.650–2.907) | 0.404 | 2.253 (1.046–4.849) | 0.038 |
ITDH1 (mutated vs wild) | 0.985 (0.498–1.949) | 0.966 | 0.810 (0.382–1.718) | 0.582 |
ITDH2 (mutated vs wild) | 0.569 (0.227–1.425) | 0.229 | 0.931 (0.368–2.357) | 0.880 |
Multivariate analyses | ||||
MiR-25 (high vs low) | 0.788 (0.421–1.476) | 0.457 | 0.510 (0.266–0.978) | 0.043 |
WBC (< 20 vs ≥ 20 × 109/L) | 1.343 (0.756–2.386) | 0.314 | 0.827 (0.450–1.519) | 0.540 |
FLT3-ITD (positive vs negative) | 2.222 (1.044–4.729) | 0.038 | 2.201 (0.951–5.096) | 0.065 |
NPM1 (mutated vs wild) | 0.586 (0.280–1.227) | 0.156 | 0.560 (0.249–1.259) | 0.161 |
DNMT3A (mutated vs wild) | 1.058 (0.549–2.037) | 0.867 | 1.514 (0.774–2.963) | 0.226 |
RUNX1 (mutated vs wild) | 1.483 (0.620–3.545) | 0.376 | 2.671 (1.114–6.402) | 0.028 |
ITDH1 (mutated vs wild) | 1.265 (0.535–2.944) | 0.592 | 0.781 (0.305–1.999) | 0.606 |
ITDH2 (mutated vs wild) | 0.524 (0.183–1.498) | 0.228 | 0.499 (0.175–1.424) | 0.194 |
Allo-HSCT may circumvent poor patient outcomes that are related to downregulated miR-25 expression
Biological insights into miR-25 profiles in AML
GO ID | GO terms | Percentage of members of the GO term present in the miR-25 profile | P-value FDR |
---|---|---|---|
GO:0031323 | Regulation of cellular metabolic process | 46.9 | 0.029 |
GO:0048522 | Regulation of cellular process | 40.3 | 0.029 |
GO:0048731 | System development | 37.2 | 0.039 |
GO:0010604 | Regulation of macromolecule metabolic process | 28.5 | 0.013 |
GO:0002376 | Immune system process | 26.5 | 0.004 |
GO:0045893 | Regulation of transcription | 16.8 | 0.037 |
GO:0048534 | Hematopoietic or lymphoid organ development | 14.7 | < 0.001 |
GO:0002520 | Immune system development | 14.7 | < 0.001 |
GO:0030097 | Hemopoiesis | 13.7 | < 0.001 |
GO:0001501 | Skeletal system development | 9.6 | 0.012 |
GO:0030099 | Myeloid cell differentiation | 8.1 | 0.009 |