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Erschienen in: BMC Infectious Diseases 1/2021

Open Access 01.12.2021 | COVID-19 | Research

Clinical outcomes in patients co-infected with COVID-19 and Staphylococcus aureus: a scoping review

verfasst von: Jenna R. Adalbert, Karan Varshney, Rachel Tobin, Rafael Pajaro

Erschienen in: BMC Infectious Diseases | Ausgabe 1/2021

Abstract

Background

Endemic to the hospital environment, Staphylococcus aureus (S. aureus) is a leading bacterial pathogen that causes deadly infections such as bacteremia and endocarditis. In past viral pandemics, it has been the principal cause of secondary bacterial infections, significantly increasing patient mortality rates. Our world now combats the rapid spread of COVID-19, leading to a pandemic with a death toll greatly surpassing those of many past pandemics. However, the impact of co-infection with S. aureus remains unclear. Therefore, we aimed to perform a high-quality scoping review of the literature to synthesize the existing evidence on the clinical outcomes of COVID-19 and S. aureus co-infection.

Methods

A scoping review of the literature was conducted in PubMed, Scopus, Ovid MEDLINE, CINAHL, ScienceDirect, medRxiv, and the WHO COVID-19 database using a combination of terms. Articles that were in English, included patients infected with both COVID-19 and S. aureus, and provided a description of clinical outcomes for patients were eligible. From these articles, the following data were extracted: type of staphylococcal species, onset of co-infection, patient sex, age, symptoms, hospital interventions, and clinical outcomes. Quality assessments of final studies were also conducted using the Joanna Briggs Institute’s critical appraisal tools.

Results

Searches generated a total of 1922 publications, and 28 articles were eligible for the final analysis. Of the 115 co-infected patients, there were a total of 71 deaths (61.7%) and 41 discharges (35.7%), with 62 patients (53.9%) requiring ICU admission. Patients were infected with methicillin-sensitive and methicillin-resistant strains of S. aureus, with the majority (76.5%) acquiring co-infection with S. aureus following hospital admission for COVID-19. Aside from antibiotics, the most commonly reported hospital interventions were intubation with mechanical ventilation (74.8 %), central venous catheter (19.1 %), and corticosteroids (13.0 %).

Conclusions

Given the mortality rates reported thus far for patients co-infected with S. aureus and COVID-19, COVID-19 vaccination and outpatient treatment may be key initiatives for reducing hospital admission and S. aureus co-infection risk. Physician vigilance is recommended during COVID-19 interventions that may increase the risk of bacterial co-infection with pathogens, such as S. aureus, as the medical community’s understanding of these infection processes continues to evolve.
Hinweise

Supplementary Information

The online version contains supplementary material available at https://​doi.​org/​10.​1186/​s12879-021-06616-4.

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Abkürzungen
COVID-19
Coronavirus disease 2019
SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2
ARDS
Acute respiratory distress syndrome
S. aureus
Staphylococcus aureus
PRISMA
Preferred Reporting Items for Systematic Reviews and Meta-Analyses
SD
Standard deviation
MSSA
Methicillin-sensitive Staphylococcus aureus
MRSA
Methicillin-resistant Staphylococcus aureus
PVL-MSSA
Panton-Valentine Leukocidin methicillin-sensitive Staphylococcus aureus
NR
Not reported
Dx findings
Diagnostic findings
CXR
Chest x-ray
ICU
Intensive care unit
PCR
Polymerase chain reaction
CT
Computed tomography
LFTs
Liver function tests
ECMO
Extracorporeal membrane oxygenation
IFN
Interferon
MRI
Magnetic resonance imaging

Background

Upon passage of the March 11th anniversary of the official declaration of the coronavirus disease 2019 (COVID-19) pandemic [1], the causative severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pathogen has infected over 181 million individuals and resulted in more than 3.9 million deaths worldwide as of July 1, 2021 [2]. In addition to rapid spread through high transmission rates [3], infection with COVID-19 can result in severe complications such as acute respiratory distress syndrome (ARDS), thromboembolic events, septic shock, and multi-organ failure [4]. In response to this novel virus, the clinical environment has evolved to accommodate the complexities of healthcare delivery in the pandemic environment [5]. Accordingly, a particularly challenging scenario for clinicians is the management of patients with common infections that may be complicated by subsequent COVID-19 co-infection, or conversely co-infected with a pathogen following primary infection with COVID-19 [6]. Bacterial co-infection in COVID-19 patients may exacerbate the immunocompromised state caused by COVID-19, further worsening clinical prognosis [7].
Implicated as a leading bacterial pathogen in both community- and healthcare-associated infections, Staphylococcus aureus (S. aureus) is commonly feared in the hospital environment for its risk of deadly outcomes such as endocarditis, bacteremia, sepsis, and death [8]. In past viral pandemics, S. aureus has been the principal cause of secondary bacterial infections, significantly increasing patient mortality rates [9]. For viral influenza infection specifically, S. aureus co-infection and bacteremia has been associated with mortality rates of almost 50%, in contrast to the 1.4% morality rates observed in patients infected with influenza alone [10]. Given the parallels between the clinical presentation, course, and outcomes of influenza and COVID-19 viral infection [11], mortality rates in COVID-19 patients co-infected with S. aureus may reflect those observed in influenza patients. However, while recent studies have focused on the incidence and prevalence of COVID-19 and S. aureus co-infection, the clinical outcomes of patients co-infected with these two specific pathogens remains unclear given that existing studies consolidate S. aureus patient outcomes with other bacterial pathogens [1214].
Given that the literature informing our knowledge of COVID-19 is a dynamic and evolving entity, the purpose of this scoping review is to evaluate the current body of evidence reporting the clinical outcomes of patients co-infected with COVID-19 and S. aureus. To date, there has been no review focusing specifically on the clinical treatment courses and subsequent outcomes of COVID-19 and S. aureus co-infection. In response to the urgency of the pandemic state and high rates of COVID-19 hospital admissions, we aim to identify important areas for further research and explore potential implications for clinical practice.

Methods

Search strategy and study selection

To provide a scoping review of initial insight into the breadth of developing data on COVID-19 and S. aureus co-infection, we followed the five-stage methodology of scoping review practice presented by Levac, Colquhoun, and O’Brien [15]. In accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) extension for Scoping Reviews [16], we conducted electronic searches in PubMed, Scopus, Ovid MEDLINE, CINAHL, ScienceDirect, medRxiv (preprint), and the WHO COVID-19 database between July 3, 2021 and July 16, 2021. Search terms were combined with the use of Boolean operators and included subject headings or key terms specific to COVID-19 (i.e. severe acute respiratory syndrome coronavirus 2 OR SARS-CoV2 OR 2019 novel coronavirus OR 2019-nCoV OR coronavirus disease 2019 virus OR COVID-19 OR Wuhan coronavirus) and Staphylococcus aureus (i.e. methicillin-resistant staphylococcus aureus OR MRSA OR methicillin-susceptible Staphylococcus aureus OR MSSA OR staphylococcal infections). A comprehensive list of our scoping terms and search strategies is included in the Appendix (Ädditional file 1: Table S1). Two independent, experienced reviewers (JA and KV) screened the titles and abstracts of eligible studies and performed full-text review on qualified selections. For this review, we broadly considered articles of any design that included patients infected with both COVID-19 and S. aureus, provided a description of the timeline and ultimate clinical outcomes for these patients (i.e. death or discharge from hospital) at study completion, and were available in English. Studies were excluded if they did not report final outcomes since our scoping review purpose was to evaluate the quality of existing literature that described the clinical course and mortality rate of patients co-infected with these pathogens. We excluded duplicate records and disagreements regarding study inclusion were resolved by consensus or feedback from the senior author.

Data extraction

For the final articles selected, we completed data extraction in duplicate, and any discrepancies were resolved through discussion or consult with the senior author. While several studies also included reports on patients infected with COVID-19 alone or co-infected with an alternative pathogen, we extracted data solely for patients with COVID-19 and S. aureus co-infection. Our data extraction items included study methodology, author and study location, type of staphylococcal species, onset of S. aureus infection, S. aureus culture site and infection source, patient sample size, age, gender, presentation, comorbidities or additional co-infections, prior history of S. aureus infection, diagnostic findings, hospital treatments and interventions, complications, total length of hospital admission, intensive care unit transfer, and final patient mortality outcomes upon study completion.

Data synthesis and analysis

Microsoft Excel 2016 (Redmond, WA, USA) was used to collect and chart data extracted from the studies that met the inclusion criteria. Data was synthesized and analyzed descriptively, with frequency counts performed for individual and grouped study metrics. The purpose of synthesizing the extracted information through this method was to create an overview of existing knowledge and identify gaps in the current literature on COVID-19 and S. aureus co-infection.

Quality assessment

Given that the majority of existing literature reporting outcomes data for COVID-19 and S. aureus co-infection were case reports, we utilized the Joanna Briggs Institute’s critical appraisal tools [17] to provide a metric for our scoping assessment of the methodological quality of the included studies. Application of these tools enabled examination of study quality in the areas of inclusion criteria, sample size, description of study participants, setting, and the appropriateness of the statistical analysis. As in previous reviews [18, 19], the tools were modified to produce a numeric score with case reports assessed based on an eight-item scale, case series on a ten-item scale, and cohort studies on an eleven-item scale. Studies were assessed with the methodological quality tool specific to their design (i.e. case report, case series, cohort) by two independent reviewers (JA and KV) and discrepancies were resolved through discussion. While debate exists regarding the minimal number of patients required for study qualification as a “case series” [20], we considered studies reporting individual patient data as “case reports” and those reporting aggregate patient data as “case series.” Our complete quality assessment, including tools and scores, is available in the Appendix (Additional file 1: Tables S2–S4).

Results

Our search strategy produced a total of 1922 potential publications with patients co-infected by COVID-19 and S. aureus. For transparent and reproducible methods, the PRISMA 2020 flow diagram for new systematic reviews was utilized to display the search results of our scoping review (Fig. 1). Following deduplication (n = 597) and a comprehensive screen of study titles and abstracts for irrelevant material (n = 1233), we reviewed 92 full texts for inclusion eligibility. Of these texts, 64 did not include patient outcomes for COVID-19 and S. aureus co-infected patients: 57 were incidence or prevalence studies with no patient-specific outcomes data, two included patients with COVID-19 and a history of S. aureus infection but no current COVID-19 and S. aureus co-infection, two were genome analysis studies with no patient data, and three were unavailable in English (Additional file 1: Table S5).

Publication types and geography

Following full-text review, 28 studies qualified for inclusion in our review, resulting in a total of 115 patients. Of these 28 included studies, 22 were case reports (describing single patients with individual data), two were case series (describing 7–42 patients with aggregate data), and four were cohort studies (describing 4–40 patients with aggregate data). Countries of study publication included the United States (n = 7) [7, 9, 2125], Italy (n = 7) [2632], Japan (n = 2) [33, 34], Iran (n = 2) [35, 36], the United Kingdom (n = 2) [37, 38], Spain (n = 2) [39, 40], Bahrain (n = 1) [41], China (n = 1) [42], France (n = 1) [43], the Philippines (n = 1) [44], Korea (n = 1) [45], and Canada (n = 1) [46], with publication dates ranging from April 15, 2020 to June 16, 2021. Table 1 describes the characteristics of these included studies and available information on their respective patient demographics in detail.
Table 1
Study and patient characteristics
First Author
Country
Publication date
Study design
Quality Assessment
N
Age
Male/Female
Type
Co-infection
Comorbidities
Outcome
Adachi
Japan
05/15/20
Case report
8/8
1
84
Female
MSSA
Klebsiella pneumoniae
None
Death
Bagnato
Italy
08/05/20
Case report
8/8
1
62
Female
MSSA
Candida tropicalis
Hypertension
Discharge
Chandran
United Kingdom
05/20/21
Case report
7/8
1
NR
Female
MSSA
None
Type 2 diabetes mellitus
Death
Chen
China
11/01/20
Case report
6/8
1
29
Male
MSSA and MRSA
Haemophilus influenzae
NR (not reported)
Discharge
Choudhury
USA
07/04/20
Case report
7/8
1
73
Male
MSSA
None
Type 2 diabetes mellitus, chronic foot osteomyelitis, aortic stenosis, prosthetic aortic valve, atrial fibrillation, prior S. aureus infection
Hospice
Cusumano
USA
11/12/20
Case series
9/10
42
65.6 (mean)
Males (n = 21), Females (n = 21)
MSSA (n = 23) and MRSA (n = 19)
Enterococcus faecalis (n = 3), Candida spp. (n = 2), Klebsiella pneumoniae (n = 2), Escheria coli (n = 1), Bacillus spp. (n = 1), Micrococcus spp. (n = 1), Staphylococcus epidermidis (n = 1), Proteus mirabilis (n = 1)
Hypertension (n = 29), diabetes mellitus (n = 21), cardiovascular disease (n = 19), lung disease (n = 7), chronic kidney disease (n = 6), malignancy (n = 5), end-stage renal disease (n = 4), organ transplant (n = 3), liver disease (n = 1)
Death at 30 days (n = 28)
De Pascale
Italy
05/31/21
Prospective cohort
8/11
40
64 (mean)
Males (n = 33), Females (n = 7)
MSSA (n = 14), MRSA (n = 26)
Bacteroidetes (n = 18), Proteobacteria (n = 7), Actinobacteria (n = 3), Tenericutes (n = 2), Fusobacteria (n = 1)1
Diabetes mellitus (n = 8), cardiovascular disease (n = 7), lung disease (n = 7), immunosuppression (n = 4), neoplasm (n = 4), chronic kidney disease (n = 3)
Death (n = 26)
Duployez
France
04/16/20
Case report
8/8
1
35
Male
MSSA (PVL-secreting)
None
None
Death
Edrada
Philippines
05/07/20
Case report
6/8
1
39
Female
MSSA
Influenza B, Klebsiella pneumoniae
None
Discharge
ElSeirafi
Bahrain
06/23/20
Case report
6/8
1
59
Male
MRSA
None
NR
Death
Filocamo
Italy
05/11/20
Case report
8/8
1
50
Male
MSSA
None
None
Discharge
Hamzavi
Iran
08/01/20
Case report
6/8
1
14
Male
MSSA
None
Cerebral palsy
Death
Hoshiyama
Japan
11/02/20
Case series
6/10
1
47
Male
MSSA
None
Previous cerebral hemorrhage
Discharge
“”
“”
“”
“”
“”
1
39
Male
MSSA
Group B Streptococcus
Hypertension
Discharge
Hussain
United Kingdom
05/22/20
Case report
8/8
1
69
Female
MSSA
None
Prosthetic aortic valve with reduced ejection fraction
Death
Levesque
Canada
07/01/20
Case report
6/8
1
53
Female
MSSA
None
Hypertension, diabetes mellitus, dyslipidemia
Hospital
Mirza
USA
11/16/20
Case report
6/8
1
29
Male
MRSA
Multi-drug resistant Pseudomonas
Cystic fibrosis with moderate obstructive lung disease, exocrine pancreatic insufficiency, gastroparesis, chronic S. aureus
Discharge
Patek
USA
04/15/20
Case report
7/8
1
0
Male
MSSA
Herpes simplex virus
Maternal history of oral herpetic lesions
Discharge
Posteraro
Italy
09/06/20
Case report
8/8
1
79
Male
MRSA
Morganella morganii, Candida glabrata, Acinetobacter baumannii, Proteus mirabilis, Klebsiella pneumoniae, Escherichia coli
Type 2 diabetes mellitus, ischemic heart disease, peripheral artery disease, left leg amputation
Death
Rajdev
USA
09/10/20
Case report
7/8
1
32
Male
MSSA
Klebsiella pneumoniae
Type 2 diabetes mellitus
Discharge
Rajdev
USA
09/28/20
Case report
7/8
1
36
Male
MSSA
Haemophilus influenzae
Hypertension, two renal transplants for renal dysplasia
Discharge
Ramos-Martinez
Spain
07/30/20
Prospective cohort
6/11
1
60
NR
MSSA
None
Type 2 diabetes mellitus, hypercholesterolemia, wrist arthritis, sternoclavicular arthritis
Death
Randall
USA
12/01/20
Case report
7/8
1
60
Male
MRSA
None
Chronic obstructive lung disease, coronary artery disease, hypothyroidism
Death
“”
“”
“”
“”
“”
1
83
Male
MRSA
None
Hypertension, atrial fibrillation
Death
“”
“”
“”
“”
“”
1
60
Male
MRSA
Hepatitis C
Hypertension, type 2 diabetes mellitus, cirrhosis
Death
Regazzoni
Italy
08/07/20
Case report
2/8
1
70
Male
MSSA
None
NR
Hospital
Sharifipour
Iran
09/01/20
Prospective cohort
7/11
1
NR
NR
MSSA
None
None
Discharge
 
“”
“”
“”
“”
1
NR
NR
MRSA
None
Type 2 diabetes mellitus
Death
Son
Korea
06/16/21
Retrospective cohort
8/11
4
79 (mean)
Male (n = 3), Female (n = 1)
MRSA
C. albicans (n = 2), Vancomycin-resistant enterococci (n = 2), S. maltophilia (n = 1) carbapenem-resistant Acinetobacter baumannii (n = 1),
NR
Death (n = 3)
Spannella
Italy
06/23/20
Case report
8/8
1
95
Female
MSSA
Citrobacter werkmanii
Hypertension, chronic heart failure, paroxysmal atrial fibrillation, dyslipidemia, chronic kidney disease, vascular dementia, sacral pressure ulcers, dysphagia
Death
Spoto
Italy
09/30/20
Case report
6/8
1
55
Female
MSSA
None
Triple negative, BRCA1-related, right breast cancer with multiple bone metastasis, type 2 diabetes mellitus
Death
Valga
Spain
06/11/20
Case report
6/8
1
68
Male
MSSA
None
Hypertension, type 2 diabetes mellitus, congestive heart failure, sleep apnea, ischemic heart disease, chronic kidney disease
Discharge
Patients were colonized with these bacterial phyla, but no distinction between colonization versus infection was reported

Publication quality

Figure 2 represents the quality assessment scores produced by the Joanna Briggs Institute’s critical appraisal tools. Scores ranged from 2 to 8 for case reports (out of 8 points total) (n = 22), 6–9 for case series (out of 10 points total) (n = 2), and 6–8 for cohort studies (out of 11 points total) (n = 4). The mean quality assessment score for these publications compared within their respective categories was 6.8 for case reports, 7.5 for case series, and 7.3 for cohort studies. In terms of most common study design limitations, the metric of patient post-intervention clinical conditions was least clearly described for case reports, neither of the case series consecutively included participants, and strategies to address incomplete follow-up were only reported for one of the four cohort studies.

Patient demographics

For the 115 total patients included in our review that were co-infected with COVID-19 and S. aureus, their demographic (Table 1) and clinical data (Table 2) were described with varying completeness. Staphylococcal species and patient outcomes are reported in both tables to enable direct comparison with patient demographics and clinical course. Across our patient sample, the mean patient age was 54.8 years (SD = 21.6), 65.3% (n = 75) were male, 32.1% (n = 37) were female, and 3 patients (2.6%) did not have their gender specified in the study. Patients presented with a diversity of comorbidities with diabetes mellitus (33.9%, n = 39), hypertension (32.2%, n = 37), and cardiovascular disease (28.7%, n = 33) reported as the most common. Five patients presented with no comorbidities and four studies reported no information on patient medical history related to comorbidities. The most common presenting symptoms reported by patients at hospital admission included cough (13.9%, n = 16), fever (13.9%, n = 16), and dyspnea (13.0%, n = 15).
Table 2
Clinical characteristics
First Author
N
Type
Diagnosis
Co-infection onset
Presentation
Dx findings
Treatments and Interventions
Complications
Length of stay
ICU
Outcome
Adachi
1
MSSA
Sputum sample, pneumonia
Uncleara
Fever, diarrhea, dyspnea
Bilateral opacities on chest x-ray (CXR), ground glass opacities & lower lobe consolidation on chest computed tomography (CT)
Antibiotics, corticosteroids, lopinavir/ritonavir, morphine
ARDS
16
Yes
Death
Bagnato
1
MSSA
Blood culture, bacteremia
Hospital-onset
Fever, cough, diarrhea, myalgia
Unremarkable head CT, normal creatine kinase
Antibiotics, corticosteroids, intubation and ventilation, antifungals, lopinavir/ritonavir, hydroxychloroquine, tocilizumab, neuromuscular blocking agents, olanzapine
Psychomotor agitation and temporospatial disorientation, myopathy
140
Yes
Discharge
Chandran
1
MSSA
Blood culture and tracheal aspirate, pneumonia (ventilator-associated) and bacteremia
Hospital-onset
Dyspnea (positive COVID test)
Bilateral interstitial infiltrates (CXR) and ground glass opacities (CT)
Antibiotics, intubation and ventilation
Bilateral cavitating lung lesions, septic shock
15
Yes
Death
Chen
1
MSSA and MRSA
Sputum sample, pneumonia
Hospital-onset
Asymptomatic (positive COVID test)
Patchy consolidation and ground glass opacities in right upper lobe on CXR (day 29)
Antibiotics, corticosteroids, lopinavir/ritonavir, Abidol combined with IFN inhalant, Thymalfasin, ribavirin, loratadine
Pneumonia
51
No
Discharge
Choudhury
1
MSSA
Blood culture, endocarditis and bacteremia
Unclearb
Altered mental status, low back pain, urinary incontinence, right foot ulcers
Cystitis and pyelonephritis on CT, epidural abscess (L4/5) on magnetic resonance imaging (MRI)
Antibiotics, oral rifampin, hydroxychloroquine
Endocarditis, aortic root abscess
NR (not reported)
NR
Hospice
Cusumano
42
MSSA (n = 23) and MRSA (n = 19)
Blood culture, bacteremia (n = 42), pneumonia (n = 8), vascular (n = 3), osteomyelitis (n = 1), skin (n = 1)
Hospital-onset (n = 28), community-onset (n = 14)
Not reported (NR)
Abnormal CXR (n = 36), vegetation on transthoracic echo (n = 1)
Antibiotics (n = 42), intubation and ventilation (n = 31), central venous catheter (n = 19)
NR
NR
NR
Death at 30 days (n = 28)
De Pascale
40
MSSA (n = 14), MRSA (n = 26)
Tracheal aspirate and blood culture, pneumonia (ventilator-associated) (n = 40) and bacteremia (n = 19)
Late hospital-onset (n = 35), early hospital-onset (n = 5)
NR
NR
Antibiotics (n = 40), intubation and ventilation (n = 40)
Septic shock (n = 22), acute kidney injury (n = 4)
11 (mean)
Yes (n = 40)
Death (n = 26)
Duployez
1
MSSA (PVL-secreting)
Pleural drainage sample, pneumonia
Unclearc
Fever, cough, bloody sputum
Consolidation of left upper lobe, left pleural effusion, right ground glass opacities, bilateral cavitary lesions on CT
Antibiotics, intubation and ventilation, extracorporeal membrane oxygenation (ECMO), anticoagulation, upper left lobectomy
Necrotizing pneumonia, deterioration of respiratory, renal, and liver functions
17
Yes
Death
Edrada
1
MSSA
Nasal and throat swab with PCR
Community-onset/carrier
Dry cough, sore throat
Unremarkable chest CT
Oseltamivir
None
19
No
Discharge
ElSeirafi
1
MRSA
Blood culture, bacteremia
Hospital-onset
Fever, dry cough, dyspnea
Bilateral pulmonary infiltrates and ARDS on CXR
Antibiotics, IFN, ribavirin, plasma therapy, tocilizumab injections
Septic shock with multi-organ dysfunction
16
Yes
Death
Filocamo
1
MSSA
Blood culture, bacteremia
Hospital-onset
Fever, dyspnea
Bilateral ground glass opacities on chest CT
Antibiotics, intubation and ventilation, lopinavir/ritonavir, hydroxychloroquine, anakinra
Progressive cholestatic liver injury
29
Yes
Discharge
Hamzavi
1
MSSA
Blood culture, bacteremia
Uncleard
Fever, cough, dyspnea, lethargy
Left pleural effusion on CXR
Antibiotics, intubation and ventilation
Multi-organ dysfunction
NR
Yes
Death
Hoshiyama
1
MSSA
Throat swab and sputum sample
Uncleare
Cough
Normal labs
NR
NR
NR
No
Discharge
“”
1
MSSA
Throat swab and sputum sample
Uncleare
Cough
Normal labs
NR
NR
NR
No
Discharge
Hussain
1
MSSA
Blood culture, bacteremia
Community-onset
Fever, cough, dyspnea, malaise
Bilateral reticular enhancement and heavily calcified aortic valve with mass effect on left atrial wall on chest CT
Antibiotics, intubation and ventilation, esophagogastroduodenoscopy, pantoprazole, amiodarone, heparin
Bleeding Dieulafoy’s lesion, fast atrial fibrillation, acute kidney injury, multi-organ failure, intracerebral hematoma
18
Yes
Death
Levesque
1
MSSA
Sputum sample, pneumonia (ventilator-associated)
Hospital-onset
Fever, dry cough, dyspnea
Small intraventricular hemorrhage on head CT (day 39)
Antibiotics, intubation and ventilation, corticosteroids, propofol, fentanyl, neuromuscular blocking agents, heparin, continuous platelet infusion, blood transfusions, IVIG, endobronchial clot removals, romiplostim, vincristine
ARDS, ICU-acquired neuromyopathy, acute kidney injury, thrombocytopenia, intraventricular hemorrhage, ventilator-associated pneumonia
At least 39
Yes
Hospital
Mirza
1
MRSA
Sputum sample
Carrier (chronic)
Chest pain, dyspnea
Bilateral upper lobe bronchial wall thickening and bronchiectasis with nodular and interstitial opacities on chest CT
Antibiotics, remdesivir
Meropenem-resistant pseudomonas
6
No
Discharge
Patek
1
MSSA
Wound culture, cellulitis
Community-onset
Fever, erythema and erosions of right thumb and fourth digit, somnolence, decreased feeding
Elevated LFTs, bilateral perihilar streaking on CXR, neutropenia
Antibiotics, acyclovir, nasal cannula O2
Hypoxic respiratory failure
7
Yes
Discharge
Posteraro
1
MRSA
Blood culture, bacteremia
Hospital-onset
Fever, cough, dyspnea
CXR and chest CT consistent with pneumonia
Antibiotics, antifungals, hydroxychloroquine, darunavir/ritonavir
Hypoxia, left leg re-amputation, septic shock
53
Yes
Death
Rajdev
1
MSSA
Sputum sample, pneumonia (ventilator-associated)
Community- and hospital-onsetf
Dyspnea
Bilateral consolidations on CXR, bilateral ground glass opacities and pneumomediastinum with subcutaneous emphysema on chest CT
Intubation and ventilation, epoprostenol, hydromorphone, neuromuscular blocking agents, ECMO
Anemia, epistaxis, oropharyngeal bleeding, ARDS
47
Yes
Discharge
Rajdev
1
MSSA
Tracheal aspirate, pneumonia
Hospital-onset
Fever, cough, dyspnea, myalgias
Diffuse bilateral pulmonary opacities on CXR
Antibiotics, intubation and ventilation, corticosteroids, tacrolimus, mycophenolate, remdesivir
Hypoxic respiratory failure, Guillan Barré syndrome
23
NR
Discharge
Ramos-Martinez
1
MSSA
Blood culture, bacteremia (central venous catheter-associated)
Hospital-onset
Fever, meningitis, right infrapopliteal deep vein thrombosis
Mild mitral insufficiency on transthoracic echo
Antibiotics, intubation and ventilation, central venous catheter, corticosteroids, tocilizumab
Native valve endocarditis, progressive sepsis
At least 20
Yes
Death
Randall
1
MRSA
Blood culture, bacteremia
Hospital-onset
Fever, cough, dyspnea
NR
Intubation and ventilation, corticosteroids, central venous catheter
Respiratory distress
3
NR
Death
“”
1
MRSA
Blood culture, bacteremia
Hospital-onset
Hypoxia (positive COVID test)
NR
Corticosteroids, remdesivir, central venous catheter
Septic shock
14
NR
Death
“”
1
MRSA
Blood culture, bacteremia
Hospital-onset
Hypoxia (positive COVID test)
NR
Corticosteroids
Cardiac arrest
10
Yes
Death
Regazzoni
1
MSSA
Nasal swab and blood culture, bacteremia
Hospital-onset
Bilateral pneumonia (positive COVID test)
Ischemic areas with hemorrhagic transformation on head CT and MRI, large vegetations on aortic valve with regurgitation on transesophageal echo
Antibiotics, corticosteroids
Severe systemic inflammatory response
At least 10
NR
Hospital
Sharifipour
1
MSSA
Tracheal aspirate, pneumonia (ventilator-associated)
Hospital-onset
Cough, dyspnea, sore throat
NR
Antibiotics, intubation and ventilation
Ventilator-associated pneumonia
13
Yes
Discharge
“”
1
MRSA
Tracheal aspirate, pneumonia (ventilator-associated)
Hospital-onset
Cough, dyspnea, sore throat
NR
Antibiotics, intubation and ventilation
Ventilator-associated pneumonia
9
Yes
Death
Son
4
MRSA
Sputum sample, pneumonia (n = 4)
Hospital-onset (n = 4)
Pneumonia (positive COVID test)
NR
Antibiotics (n = 4), corticosteroids (n = 4)
NR
42 (mean)
Yes
Death (n = 3)
Spannella
1
MSSA
Bronchoalveolar lavage, pneumonia
Community-onset
Fever, cough, emesis
Bilateral ground glass opacities and multiple areas of consolidation on CXR
Antibiotics, metoprolol, amiodarone, continuous positive-pressure airway
Atrial fibrillation, respiratory failure, altered mental status, tachycardia, severe hypoxemia
27
Yes
Death
Spoto
1
MSSA
Tracheal aspirate, pneumonia
Unclearg
Fever, dyspnea, respiratory distress following chemoimmunotherapy
Bilateral ground glass opacities and consolidation in the middle/upper lobes on chest CT
Antibiotics, intubation and ventilation, lopinavir-ritonavir, hydroxychloroquine
ARDS
5
NR
Death
Valga
1
MSSA
Tracheal aspirate, pneumonia
Hospital-onset
Fever, dry cough
NR
Antibiotics, intubation and ventilation, corticosteroids, hydroxychloroquine, lopinavir/ritonavir, IFN beta, heparin
ARDS, multi-organ failure
47
Yes
Discharge
aPositive sputum culture on day 10
bPatient recently treated for S. aureus prior to admission, but setting is unclear
cPleural fluid tested on day 4
dTimeline of blood culture unclear
eTimeline of sputum testing unclear
fPositive sputum on admission, subsequent ventilator-associated infection
gPatient was receiving routine treatments in a healthcare-setting

Infection characteristics

In terms of specific staphylococcal species co-infection, 51.3% (n = 59) of patients were infected with methicillin-sensitive staphylococcus aureus (MSSA) and 49.6% (n = 57) were infected with methicillin-resistant staphylococcus aureus (MRSA), with a single patient co-infected with both MRSA and MSSA. One patient co-infected with MSSA had a fatal Panton-Valentine Leukocidin toxin-producing strain of MSSA (PVL-MSSA). In addition to COVID-19 and S. aureus co-infection, 26.1% (n = 30) of patients were co-infected with one or more separate pathogens such as Klebsiella pneumoniae (n = 6), Candida spp. (n = 6), Enterococcus spp. (n = 5), Haemophilus influenzae (n = 2), Proteus mirabilis (n = 2), Escherichia coli (n = 2). Comprehensive patient co-infection data are reported in Table 1.

Diagnoses and treatments

Of all 115 reported cases of co-infection with COVID-19 and S. aureus, diagnosis of S. aureus infection was most frequently established by blood culture in our patient sample (64.3%, n = 74), with S. aureus infections manifesting predominantly in patients as bacteremia (64.3%, n = 74) and pneumonia (55.7%, n = 64), accompanied by several additional endocarditis/vasculitis (3.5%, n = 4), cellulitis (1.7%, n = 2), and osteomyelitis (0.9%, n = 1) cases. Additionally, two patients that tested positive for S. aureus with no clear infection source were suspected to be chronic carriers of the bacterial pathogen. From this variety of infection presentations, the majority (76.5%, n = 88) experienced hospital-onset S. aureus co-infection following hospitalization for an initial infection with COVID-19, and 19 patients (16.5%) presented with S. aureus infection at the time of admission that was determined to be community-onset in etiology. Aside from a standard course of antibiotics, patients received a diversity of adjuvant treatments during their hospital admission, with the most common interventions including intubation and mechanical ventilation (74.8%, n = 86), a central venous catheter (19.1%, n = 22), and corticosteroids (13.0%, n = 15). Table 2 describes the clinical course following hospital admission for each patient in comprehensive detail.

Complications and outcomes

During the hospital course of the 115 co-infected patients in our review, the most common complications were sepsis or systemic inflammatory response syndrome (23.5 %, n = 27), acute kidney injury (5.2%, n = 6), acute respiratory distress syndrome (4.3%, n = 5), pneumonia (4.3%, n = 5), and multi-organ dysfunction or failure (4.3%, n = 5). Transfer to an intensive care unit during admission was clearly reported for 53.9% (n = 62) of patients, unnecessary for 4.3% (n = 5), and not reported for the remaining 41.8% (n = 48). Patients were admitted for a mean length of 26.2 days (SD = 26.7) to any type of inpatient hospital unit, with the length of hospital stay not reported in five cases. Upon analysis of the final outcomes reported for the hospital course of our co-infected COVID-19 and S. aureus patient sample, 71 (61.7%) patients died, 41 (35.7%) were discharged, two remained hospitalized and in stable condition on study conclusion, and one patient was placed in hospice care. Table 2 further details the specific complications presenting in each patient’s hospital trajectory and Table 3 reports the final pooled frequencies of patient co-infection characteristics and outcomes.
Table 3
Pooled frequencies of patient co-infection characteristics and outcomes (n = 115)
 
Total (%)
Gender
 Male
75 (65.3 )
 Female
37 (32.1)
 Unspecified
3 (2.6)
Staphylococcal Species
 MSSA
59 (51.3)
 MRSA
57 (49.6)
Co-infection
Klebsiella pneumoniae
6 (5.2)
 Candida spp.
6 (5.2)
 Enterococcus spp.
5 (4.3)
Hemophilus influenzae
2 (1.7)
Escherichia coli
2 (1.7)
Proteus mirabilis
2 (1.7)
Acinetobacter baumannii
2 (1.7)
 Bacillus spp.
1 (0.9)
Staphylococcus epidermidis
1 (0.9)
 Micrococcus spp.
1 (0.9)
 Pseudomonas spp.
1 (0.9)
Morganella morganii
1 (0.9)
Citrobacter werkmanii
1 (0.9)
S. maltophilia
1 (0.9)
 Hepatitis C
1 (0.9)
 Herpes simplex virus
1 (0.9)
 Group B Streptococcus
1 (0.9)
 None
83 (72.2)
S. Aureus Diagnostic Test
 Blood culture
74 (64.3)
 Tracheal aspirate
46 (40.0)
 Sputum sample
11 (9.5)
 Nasal swab
2 (1.7)
 Lower respiratory tract sample
2 (1.7)
 Chronic carrier
2 (1.7)
 Wound culture
1 (0.9)
S. aureus Diagnosis
 Bacteremia
74 (63.4)
 Pneumonia
64 (55.7)
 Ventilator-associated
44 (38.3)
 Endocarditis/vasculitis
4 (3.5)
 Cellulitis
2 (1.7)
 Chronic carrier
2 (1.7)
 Osteomyelitis
1 (0.9)
 Not reported
2 (1.7)
S. Aureus Infection Onset
 Hospital
88 (76.5)
 Community
19 (16.5)
 Unclear
7 (6.1)
Complications
 Sepsis/Systemic Inflammatory Response Syndrome
27 (23.5)
 Acute kidney injury
6 (5.2 
 Acute respiratory distress syndrome
5 (4.3)
 Pneumonia
5 (4.3)
 Multi-organ dysfunction/failure
5 (4.3)
 Bleeding/coagulopathy
5 (4.3)
 Hypoxic respiratory failure
3 (2.6)
 Myopathy/neuropathy
3 (2.6)
 Abscess formation
2 (1.7)
 Confusion and altered mental status
2 (1.7)
 Atrial fibrillation
2 (1.7)
 Endocarditis
2 (1.7)
 Anemia
1 (0.9)
 Cardiac arrest
1 (0.9)
 Thrombocytopenia
1 (0.9)
 Re-amputation
1 (0.9)
 Cholestatic liver injury
1 (0.9)
 Not reported
3 (2.6)
ICU
 Yes
62 (53.9)
 No
5 (4.3)
 Not reported
48 (41.8)
Outcome
 Death
71 (61.7)
 Discharge
41 (35.7)
 Hospital
2 (1.7)
 Hospice
1 (0.9)

Discussion

As our evidence base of the outcomes of patients with COVID-19 infection continues to expand, thorough review of the various clinical scenarios and environments inherent to the treatment process of this disease are crucial for patient care management and improvement. Given that higher levels of morbidity and death have been observed in influenza patients co-infected with multiple pathogens during past pandemics [47], exploring the outcomes of co-infected COVID-19 patients may establish similar trends and reveal strategies for decreasing the morbidity and mortality of this population in our current pandemic. Our review of the available clinical data reporting the outcomes of patients co-infected with COVID-19 and the common bacterial pathogen, S. aureus, was purposed to augment this knowledge base and has produced several key findings regarding mortality rate, co-infection onset, and treatment considerations for these patients.
Foremost, the mortality rate in our review for patients co-infected with COVID-19 and S. aureus was 61.7%, which depicts a significantly increased mortality rate when contrasted with patients infected solely by COVID-19 [48]. This outcome is comparable to the increased morality rates observed in patients acquiring co-infection with S. aureus in addition to influenza [10], however, our findings emphasize an important difference in the etiology of COVID-19 and influenza co-infection with S. aureus. For influenza specifically, co-infection with S. aureus is predominantly diagnosed upon patient presentation to a healthcare setting, indicating that the community is a frequent and supportive environment for the co-infection processes of these pathogens [9, 49]. In contrast, our findings indicate that co-infection with S. aureus predominantly occurs in the hospital environment for patients with COVID-19 infection. The terminology used to differentiate these infection etiologies is “community-associated” versus “healthcare-associated,” with delineation between these diagnoses occurring at 48-hours after admission to a hospital or healthcare facility [50]. Given that co-infection with COVID-19 and S. aureus occurred after hospital admission in 76.5% of the patients in our review, preventative measures in the community-setting or treatment in an outpatient environment may be important considerations for mortality reduction from healthcare-associated S. aureus infection.
Importantly, while the predominance of S. aureus co-infections occurring after patient admission for COVID-19 infection is likely associated with a wide diversity of patient- and environment-specific factors, our findings suggest that this infection sequence may be partly attributed to the COVID-19 treatment course. The most common patient interventions identified in our review included intubation and mechanical ventilation, central venous catheter placement, and corticosteroids, which are each associated with increased risks of bacterial infection through introduction of a foreign body or immunosuppressive properties that dually support bacterial growth [51, 52]. Although these first-line treatments for decompensating patients that present with severe COVID-19 infection may predispose patients to S. aureus bacterial co-infection and subsequently increased mortality rates, they are often unavoidable during the patient treatment course. Vigilant management surrounding these interventions in patients with COVID-19 infection, such as timely central line or ventilator removal and prudent steroid dosing, are key quality improvement practices that warrant routine physician adherence during patient treatment processes given co-infection mortality rates.
In contrast to COVID-19 infection alone, the increased patient morbidity and mortality of COVID-19 and healthcare-associated S. aureus co-infection identified in our review have important implications for future research and clinical practice. While of clear and crucial public health importance, our findings further emphasize the imperative of COVID-19 vaccination to reduce both infection and symptom severity that may predispose patients to the necessity of hospital interventions and subsequent S. aureus co-infection. The effectiveness of this strategy is exemplified by the reduction in influenza and S. aureus pathology observed with increased influenza vaccination [53, 54]. As seen with influenza co-infection, vaccination may be a crucial harm reduction measure given that no S. aureus prophylaxis exists, and the incidence of S. aureus strains refractory to antibiotics is rising [55]. Additionally, the mortality trends observed in COVID-19 patients co-infected with S. aureus highlight the necessity for future reviews and clinical studies focused on the co-infection outcomes of other bacterial and viral pathogens alongside COVID-19. Further research may inform our ability to predict the trajectory of patients with various co-infections and identify infection patterns that influence treatment decisions.
To our knowledge, this is the first study to review and evaluate the outcomes of patients co-infected with COVID-19 and S. aureus. However, we acknowledge several limitations to this review. First, the majority of the studies included in our review were individual case reports due to the recent emergence of COVID-19 and limited literature exploring outcomes for patients co-infected with S. aureus. While these types of studies can be vital for expanding the medical knowledge base and reveal fundamental disease characteristics, it is crucial to consider the reporting bias that may exist in this study design and lack of comparison groups. Per our quality assessment, trends in study limitations for each type of publication were variable. Accordingly, our intent for this review was to pool these outcomes in order to reduce this bias and transparently report each case for appropriate assessment and application of our findings. In addition, Cusumano et al.’s [9] case series comprised 42 of the patients in our review and used a study end-point of death at 30 days, implicating that the true mortality rate of patients with COVID-19 and S. aureus co-infection may be higher if related complications necessitate an extended hospital course. Future high-quality clinical studies examining patient outcomes are warranted and of critical importance to further expand on the findings of our systematic review.

Conclusion

In contrast to patients infected solely with COVID-19, co-infection with COVID-19 and S. aureus demonstrates a higher patient mortality rate during hospital admission. S. aureus co-infection in COVID-19 patients is predominantly healthcare-associated, and common hospital interventions for patients with severe COVID-19 infection may increase the risk for bacterial infection. Our findings emphasize the imperative of COVID-19 vaccination to prevent hospitalization for COVID-19 treatment and the subsequent susceptibility to hospital-acquired S. aureus co-infection.

Acknowledgements

The authors would like to thank the staff of the Thomas Jefferson University Scott Memorial Library for their assistance with search term construction and instruction on optimal review practices.

Declarations

Not applicable.
Not applicable.

Competing interests

The authors declare that they have no competing interests.
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Metadaten
Titel
Clinical outcomes in patients co-infected with COVID-19 and Staphylococcus aureus: a scoping review
verfasst von
Jenna R. Adalbert
Karan Varshney
Rachel Tobin
Rafael Pajaro
Publikationsdatum
01.12.2021
Verlag
BioMed Central
Schlagwort
COVID-19
Erschienen in
BMC Infectious Diseases / Ausgabe 1/2021
Elektronische ISSN: 1471-2334
DOI
https://doi.org/10.1186/s12879-021-06616-4

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