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Erschienen in: European Radiology 8/2020

28.03.2020 | Magnetic Resonance

Classification of pulmonary lesion based on multiparametric MRI: utility of radiomics and comparison of machine learning methods

verfasst von: Xinhui Wang, Qi Wan, Houjin Chen, Yanfeng Li, Xinchun Li

Erschienen in: European Radiology | Ausgabe 8/2020

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Abstract

Objectives

We develop and validate a radiomics model based on multiparametric magnetic resonance imaging (MRI) in the classification of the pulmonary lesion and identify optimal machine learning methods.

Materials and methods

This retrospective analysis included 201 patients (143 malignancies, 58 benign lesions). Radiomics features were extracted from multiparametric MRI, including T2-weighted imaging (T2WI), T1-weighted imaging (TIWI), and apparent diffusion coefficient (ADC) map. Three feature selection methods, including recursive feature elimination (RFE), t test, and least absolute shrinkage and selection operator (LASSO), and three classification methods, including linear discriminate analysis (LDA), support vector machine (SVM), and random forest (RF) were used to distinguish benign and malignant pulmonary lesions. Performance was compared by AUC, sensitivity, accuracy, precision, and specificity. Analysis of performance differences in three randomly drawn cross-validation sets verified the stability of the results.

Results

For most single MR sequences or combinations of multiple MR sequences, RFE feature selection method with SVM classifier had the best performance, followed by RFE with RF. The radiomics model based on multiple sequences showed a higher diagnostic accuracy than single sequence for every machine learning method. Using RFE with SVM, the joint model of T1WI, T2WI, and ADC showed the highest performance with AUC = 0.88 ± 0.02 (sensitivity 83%; accuracy 82%; precision 91%; specificity 79%) in test set.

Conclusion

Quantitative radiomics features based on multiparametric MRI have good performance in differentiating lung malignancies and benign lesions. The machine learning method of RFE with SVM is superior to the combination of other feature selection and classifier methods.

Key Points

Radiomics approach has the potential to distinguish between benign and malignant pulmonary lesions.
• Radiomics model based on multiparametric MRI has better performance than single-sequence models.
• The machine learning methods RFE with SVM perform best in the current cohort.
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Literatur
1.
Zurück zum Zitat Siegel RL, Miller KD, Jemal A (2018) Cancer statistics, 2018. CA Cancer J Clin 68:7–30CrossRef Siegel RL, Miller KD, Jemal A (2018) Cancer statistics, 2018. CA Cancer J Clin 68:7–30CrossRef
2.
Zurück zum Zitat Wan Q, Deng YS, Lei Q et al (2019) Differentiating between malignant and benign solid solitary pulmonary lesions: are intravoxel incoherent motion and diffusion kurtosis imaging superior to conventional diffusion-weighted imaging? Eur Radiol 29:1607–1615CrossRef Wan Q, Deng YS, Lei Q et al (2019) Differentiating between malignant and benign solid solitary pulmonary lesions: are intravoxel incoherent motion and diffusion kurtosis imaging superior to conventional diffusion-weighted imaging? Eur Radiol 29:1607–1615CrossRef
3.
Zurück zum Zitat Meier-Schroers M, Homsi R, Gieseke J, Schild HH, Thomas D (2019) Lung cancer screening with MRI: evaluation of MRI for lung cancer screening by comparison of LDCT- and MRI-derived lung-RADS categories in the first two screening rounds. Eur Radiol 29:898–905CrossRef Meier-Schroers M, Homsi R, Gieseke J, Schild HH, Thomas D (2019) Lung cancer screening with MRI: evaluation of MRI for lung cancer screening by comparison of LDCT- and MRI-derived lung-RADS categories in the first two screening rounds. Eur Radiol 29:898–905CrossRef
4.
Zurück zum Zitat Brea TP, Ravina AR, Villamor JMC, Gomez AG, de Alegria AM, Valdes L (2019) Use of magnetic resonance imaging for N-staging in patients with non-small cell lung cancer. A systematic review. Arch Bronconeumol 55:9–16CrossRef Brea TP, Ravina AR, Villamor JMC, Gomez AG, de Alegria AM, Valdes L (2019) Use of magnetic resonance imaging for N-staging in patients with non-small cell lung cancer. A systematic review. Arch Bronconeumol 55:9–16CrossRef
5.
Zurück zum Zitat Guan HX, Pan YY, Wang YJ, Tang DZ, Zhou SC, Xia LM (2018) Comparison of various parameters of DWI in distinguishing solitary pulmonary nodules. Curr Med Sci 38:920–924CrossRef Guan HX, Pan YY, Wang YJ, Tang DZ, Zhou SC, Xia LM (2018) Comparison of various parameters of DWI in distinguishing solitary pulmonary nodules. Curr Med Sci 38:920–924CrossRef
7.
Zurück zum Zitat Yuan M, Zhang YD, Zhu C et al (2016) Comparison of intravoxel incoherent motion diffusion-weighted MR imaging with dynamic contrast-enhanced MRI for differentiating lung cancer from benign solitary pulmonary lesions. J Magn Reson Imaging 43:669–679CrossRef Yuan M, Zhang YD, Zhu C et al (2016) Comparison of intravoxel incoherent motion diffusion-weighted MR imaging with dynamic contrast-enhanced MRI for differentiating lung cancer from benign solitary pulmonary lesions. J Magn Reson Imaging 43:669–679CrossRef
8.
Zurück zum Zitat Le Bihan D, Iima M (2015) Diffusion magnetic resonance imaging: what water tells us about biological tissues. PLoS Biol 13:e1002203CrossRef Le Bihan D, Iima M (2015) Diffusion magnetic resonance imaging: what water tells us about biological tissues. PLoS Biol 13:e1002203CrossRef
9.
Zurück zum Zitat Shen G, Hu S, Deng H, Kuang A (2016) Performance of DWI in the nodal characterization and assessment of lung cancer: a meta-analysis. AJR Am J Roentgenol 206:283–290CrossRef Shen G, Hu S, Deng H, Kuang A (2016) Performance of DWI in the nodal characterization and assessment of lung cancer: a meta-analysis. AJR Am J Roentgenol 206:283–290CrossRef
10.
Zurück zum Zitat Shen G, Jia Z, Deng H (2016) Apparent diffusion coefficient values of diffusion-weighted imaging for distinguishing focal pulmonary lesions and characterizing the subtype of lung cancer: a meta-analysis. Eur Radiol 26:556–566CrossRef Shen G, Jia Z, Deng H (2016) Apparent diffusion coefficient values of diffusion-weighted imaging for distinguishing focal pulmonary lesions and characterizing the subtype of lung cancer: a meta-analysis. Eur Radiol 26:556–566CrossRef
11.
Zurück zum Zitat Bi WL, Hosny A, Schabath MB et al (2019) Artificial intelligence in cancer imaging: clinical challenges and applications. CA Cancer J Clin 69:127–157PubMedPubMedCentral Bi WL, Hosny A, Schabath MB et al (2019) Artificial intelligence in cancer imaging: clinical challenges and applications. CA Cancer J Clin 69:127–157PubMedPubMedCentral
12.
Zurück zum Zitat van Griethuysen JJM, Fedorov A, Parmar C et al (2017) Computational radiomics system to decode the radiographic phenotype. Cancer Res 77:e104–e107CrossRef van Griethuysen JJM, Fedorov A, Parmar C et al (2017) Computational radiomics system to decode the radiographic phenotype. Cancer Res 77:e104–e107CrossRef
13.
Zurück zum Zitat Kniep HC, Madesta F, Schneider T et al (2019) Radiomics of brain MRI: utility in prediction of metastatic tumor type. Radiology 290:479–487CrossRef Kniep HC, Madesta F, Schneider T et al (2019) Radiomics of brain MRI: utility in prediction of metastatic tumor type. Radiology 290:479–487CrossRef
14.
Zurück zum Zitat Lin M, Chen W, Zhao M et al (2018) Prostate lesion delineation from multiparametric magnetic resonance imaging based on locality alignment discriminant analysis. Med Phys 45:4607–4618CrossRef Lin M, Chen W, Zhao M et al (2018) Prostate lesion delineation from multiparametric magnetic resonance imaging based on locality alignment discriminant analysis. Med Phys 45:4607–4618CrossRef
15.
Zurück zum Zitat Yang R, Wu J, Sun L et al (2019) Radiomics of small renal masses on multiphasic CT: accuracy of machine learning-based classification models for the differentiation of renal cell carcinoma and angiomyolipoma without visible fat. Eur Radiol. https://doi.org/10.1007/s00330-019-06384-5 Yang R, Wu J, Sun L et al (2019) Radiomics of small renal masses on multiphasic CT: accuracy of machine learning-based classification models for the differentiation of renal cell carcinoma and angiomyolipoma without visible fat. Eur Radiol. https://​doi.​org/​10.​1007/​s00330-019-06384-5
16.
Zurück zum Zitat Yin P, Mao N, Zhao C et al (2019) Comparison of radiomics machine-learning classifiers and feature selection for differentiation of sacral chordoma and sacral giant cell tumour based on 3D computed tomography features. Eur Radiol 29:1841–1847CrossRef Yin P, Mao N, Zhao C et al (2019) Comparison of radiomics machine-learning classifiers and feature selection for differentiation of sacral chordoma and sacral giant cell tumour based on 3D computed tomography features. Eur Radiol 29:1841–1847CrossRef
17.
Zurück zum Zitat Maniruzzaman M, Jahanur Rahman M, Ahammed B et al (2019) Statistical characterization and classification of colon microarray gene expression data using multiple machine learning paradigms. Comput Methods Programs Biomed 176:173–193CrossRef Maniruzzaman M, Jahanur Rahman M, Ahammed B et al (2019) Statistical characterization and classification of colon microarray gene expression data using multiple machine learning paradigms. Comput Methods Programs Biomed 176:173–193CrossRef
19.
Zurück zum Zitat Zhang X, Yan LF, Hu YC et al (2017) Optimizing a machine learning based glioma grading system using multi-parametric MRI histogram and texture features. Oncotarget 8:47816–47830CrossRef Zhang X, Yan LF, Hu YC et al (2017) Optimizing a machine learning based glioma grading system using multi-parametric MRI histogram and texture features. Oncotarget 8:47816–47830CrossRef
21.
Zurück zum Zitat Peng Y, Jiang Y, Antic T, Giger ML, Eggener SE, Oto A (2014) Validation of quantitative analysis of multiparametric prostate MR images for prostate cancer detection and aggressiveness assessment: a cross-imager study. Radiology 271:461–471CrossRef Peng Y, Jiang Y, Antic T, Giger ML, Eggener SE, Oto A (2014) Validation of quantitative analysis of multiparametric prostate MR images for prostate cancer detection and aggressiveness assessment: a cross-imager study. Radiology 271:461–471CrossRef
22.
Zurück zum Zitat Peng Y, Jiang Y, Yang C et al (2013) Quantitative analysis of multiparametric prostate MR images: differentiation between prostate cancer and normal tissue and correlation with Gleason score--a computer-aided diagnosis development study. Radiology 267:787–796CrossRef Peng Y, Jiang Y, Yang C et al (2013) Quantitative analysis of multiparametric prostate MR images: differentiation between prostate cancer and normal tissue and correlation with Gleason score--a computer-aided diagnosis development study. Radiology 267:787–796CrossRef
23.
Zurück zum Zitat Chatterjee S, Dey D, Munshi S (2019) Integration of morphological preprocessing and fractal based feature extraction with recursive feature elimination for skin lesion types classification. Comput Methods Programs Biomed 178:201–218CrossRef Chatterjee S, Dey D, Munshi S (2019) Integration of morphological preprocessing and fractal based feature extraction with recursive feature elimination for skin lesion types classification. Comput Methods Programs Biomed 178:201–218CrossRef
24.
Zurück zum Zitat Fan M, Liu Z, Xie S et al (2019) Integration of dynamic contrast-enhanced magnetic resonance imaging and T2-weighted imaging radiomic features by a canonical correlation analysis-based feature fusion method to predict histological grade in ductal breast carcinoma. Phys Med Biol. https://doi.org/10.1088/1361-6560/ab3fd3 Fan M, Liu Z, Xie S et al (2019) Integration of dynamic contrast-enhanced magnetic resonance imaging and T2-weighted imaging radiomic features by a canonical correlation analysis-based feature fusion method to predict histological grade in ductal breast carcinoma. Phys Med Biol. https://​doi.​org/​10.​1088/​1361-6560/​ab3fd3
25.
Zurück zum Zitat Liu Y, Shi H, Huang S et al (2019) Early prediction of acute xerostomia during radiation therapy for nasopharyngeal cancer based on delta radiomics from CT images. Quant Imaging Med Surg 9:1288–1302CrossRef Liu Y, Shi H, Huang S et al (2019) Early prediction of acute xerostomia during radiation therapy for nasopharyngeal cancer based on delta radiomics from CT images. Quant Imaging Med Surg 9:1288–1302CrossRef
26.
Zurück zum Zitat Shen TX, Liu L, Li WH et al (2019) CT imaging-based histogram features for prediction of EGFR mutation status of bone metastases in patients with primary lung adenocarcinoma. Cancer Imaging 19:34CrossRef Shen TX, Liu L, Li WH et al (2019) CT imaging-based histogram features for prediction of EGFR mutation status of bone metastases in patients with primary lung adenocarcinoma. Cancer Imaging 19:34CrossRef
29.
Zurück zum Zitat Garapati SS, Hadjiiski L, Cha KH et al (2017) Urinary bladder cancer staging in CT urography using machine learning. Med Phys 44:5814–5823CrossRef Garapati SS, Hadjiiski L, Cha KH et al (2017) Urinary bladder cancer staging in CT urography using machine learning. Med Phys 44:5814–5823CrossRef
30.
Zurück zum Zitat Chen L, Pan X, Zhang YH et al (2019) Primary tumor site specificity is preserved in patient-derived tumor xenograft models. Front Genet 10:738CrossRef Chen L, Pan X, Zhang YH et al (2019) Primary tumor site specificity is preserved in patient-derived tumor xenograft models. Front Genet 10:738CrossRef
31.
Zurück zum Zitat Chen X, Zargari A, Hollingsworth AB, Liu H, Zheng B, Qiu Y (2019) Applying a new quantitative image analysis scheme based on global mammographic features to assist diagnosis of breast cancer. Comput Methods Programs Biomed 179:104995CrossRef Chen X, Zargari A, Hollingsworth AB, Liu H, Zheng B, Qiu Y (2019) Applying a new quantitative image analysis scheme based on global mammographic features to assist diagnosis of breast cancer. Comput Methods Programs Biomed 179:104995CrossRef
32.
Zurück zum Zitat Geetha R, Sivasubramanian S, Kaliappan M, Vimal S, Annamalai S (2019) Cervical cancer identification with synthetic minority oversampling technique and PCA analysis using random forest classifier. J Med Syst 43:286CrossRef Geetha R, Sivasubramanian S, Kaliappan M, Vimal S, Annamalai S (2019) Cervical cancer identification with synthetic minority oversampling technique and PCA analysis using random forest classifier. J Med Syst 43:286CrossRef
33.
Zurück zum Zitat Chen CH, Chang CK, Tu CY et al (2018) Radiomic features analysis in computed tomography images of lung nodule classification. PLoS One 13:e0192002CrossRef Chen CH, Chang CK, Tu CY et al (2018) Radiomic features analysis in computed tomography images of lung nodule classification. PLoS One 13:e0192002CrossRef
34.
Zurück zum Zitat Choi W, Oh JH, Riyahi S et al (2018) Radiomics analysis of pulmonary nodules in low-dose CT for early detection of lung cancer. Med Phys 45:1537–1549CrossRef Choi W, Oh JH, Riyahi S et al (2018) Radiomics analysis of pulmonary nodules in low-dose CT for early detection of lung cancer. Med Phys 45:1537–1549CrossRef
35.
Zurück zum Zitat Wu W, Parmar C, Grossmann P et al (2016) Exploratory study to identify radiomics classifiers for lung cancer histology. Front Oncol 6:71PubMedPubMedCentral Wu W, Parmar C, Grossmann P et al (2016) Exploratory study to identify radiomics classifiers for lung cancer histology. Front Oncol 6:71PubMedPubMedCentral
36.
Zurück zum Zitat Mei D, Luo Y, Wang Y, Gong J (2018) CT texture analysis of lung adenocarcinoma: can radiomic features be surrogate biomarkers for EGFR mutation statuses. Cancer Imaging 18:52CrossRef Mei D, Luo Y, Wang Y, Gong J (2018) CT texture analysis of lung adenocarcinoma: can radiomic features be surrogate biomarkers for EGFR mutation statuses. Cancer Imaging 18:52CrossRef
37.
Zurück zum Zitat Coroller TP, Agrawal V, Narayan V et al (2016) Radiomic phenotype features predict pathological response in non-small cell lung cancer. Radiother Oncol 119:480–486CrossRef Coroller TP, Agrawal V, Narayan V et al (2016) Radiomic phenotype features predict pathological response in non-small cell lung cancer. Radiother Oncol 119:480–486CrossRef
38.
Zurück zum Zitat Gillies RJ, Kinahan PE, Hricak H (2016) Radiomics: images are more than pictures, they are data. Radiology 278:563–577CrossRef Gillies RJ, Kinahan PE, Hricak H (2016) Radiomics: images are more than pictures, they are data. Radiology 278:563–577CrossRef
Metadaten
Titel
Classification of pulmonary lesion based on multiparametric MRI: utility of radiomics and comparison of machine learning methods
verfasst von
Xinhui Wang
Qi Wan
Houjin Chen
Yanfeng Li
Xinchun Li
Publikationsdatum
28.03.2020
Verlag
Springer Berlin Heidelberg
Erschienen in
European Radiology / Ausgabe 8/2020
Print ISSN: 0938-7994
Elektronische ISSN: 1432-1084
DOI
https://doi.org/10.1007/s00330-020-06768-y

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