Skip to main content
Erschienen in: Brain Structure and Function 2/2020

31.01.2020 | Review

Investigating learning-related neural circuitry with chronic in vivo optical imaging

verfasst von: Christian R. Lee, Laleh Najafizadeh, David J. Margolis

Erschienen in: Brain Structure and Function | Ausgabe 2/2020

Einloggen, um Zugang zu erhalten

Abstract

Fundamental aspects of brain function, including development, plasticity, learning, and memory, can take place over time scales of days to years. Chronic in vivo imaging of neural activity with cellular resolution is a powerful method for tracking the long-term activity of neural circuits. We review recent advances in our understanding of neural circuit function from diverse brain regions that have been enabled by chronic in vivo cellular imaging. Insight into the neural basis of learning and decision-making, in particular, benefit from the ability to acquire longitudinal data from genetically identified neuronal populations, deep brain areas, and subcellular structures. We propose that combining chronic imaging with further experimental and computational innovations will advance our understanding of the neural circuit mechanisms of brain function.
Literatur
Zurück zum Zitat Akassoglou K, Merlini M, Rafalski VA et al (2017) Imaging of CNS injury and disease. J Neurosci Off J Soc Neurosci 37:10808–10816 Akassoglou K, Merlini M, Rafalski VA et al (2017) Imaging of CNS injury and disease. J Neurosci Off J Soc Neurosci 37:10808–10816
Zurück zum Zitat Alivisatos AP, Chun M, Church GM et al (2015) A national network of neurotechnology centers for the BRAIN initiative. Neuron 88:445–448PubMedPubMedCentral Alivisatos AP, Chun M, Church GM et al (2015) A national network of neurotechnology centers for the BRAIN initiative. Neuron 88:445–448PubMedPubMedCentral
Zurück zum Zitat Andermann ML, Gilfoy NB, Goldey GJ et al (2013) Chronic cellular imaging of entire cortical columns in awake mice using microprisms. Neuron 80:900–913PubMed Andermann ML, Gilfoy NB, Goldey GJ et al (2013) Chronic cellular imaging of entire cortical columns in awake mice using microprisms. Neuron 80:900–913PubMed
Zurück zum Zitat Bando Y, Sakamoto M, Kim S et al (2019) Comparative evaluation of genetically encoded voltage indicators. Cell reports 26:802–813.e4PubMed Bando Y, Sakamoto M, Kim S et al (2019) Comparative evaluation of genetically encoded voltage indicators. Cell reports 26:802–813.e4PubMed
Zurück zum Zitat Barretto RPJ, Messerschmidt B, Schnitzer MJ (2009) In vivo fluorescence imaging with high-resolution microlenses. Nat Methods 6:511–512PubMedPubMedCentral Barretto RPJ, Messerschmidt B, Schnitzer MJ (2009) In vivo fluorescence imaging with high-resolution microlenses. Nat Methods 6:511–512PubMedPubMedCentral
Zurück zum Zitat Barth AL, Poulet JFA (2012) Experimental evidence for sparse firing in the neocortex. Trends Neurosci 35:345–355PubMed Barth AL, Poulet JFA (2012) Experimental evidence for sparse firing in the neocortex. Trends Neurosci 35:345–355PubMed
Zurück zum Zitat Bedbrook CN, Deverman BE, Gradinaru V (2018) Viral strategies for targeting the central and peripheral nervous systems. Annu Rev Neurosci 41:323–348PubMed Bedbrook CN, Deverman BE, Gradinaru V (2018) Viral strategies for targeting the central and peripheral nervous systems. Annu Rev Neurosci 41:323–348PubMed
Zurück zum Zitat Berens P, Freeman J, Deneux T et al (2018) Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS Comput Biol 14:e1006157PubMedPubMedCentral Berens P, Freeman J, Deneux T et al (2018) Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS Comput Biol 14:e1006157PubMedPubMedCentral
Zurück zum Zitat Bloem B, Huda R, Sur M, Graybiel AM (2017) Two-photon imaging in mice shows striosomes and matrix have overlapping but differential reinforcement-related responses. Elife 6:e32353PubMedPubMedCentral Bloem B, Huda R, Sur M, Graybiel AM (2017) Two-photon imaging in mice shows striosomes and matrix have overlapping but differential reinforcement-related responses. Elife 6:e32353PubMedPubMedCentral
Zurück zum Zitat Bocarsly ME, Jiang W-C, Wang C et al (2015) Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain. Biomed Opt Express 6:4546–4556PubMedPubMedCentral Bocarsly ME, Jiang W-C, Wang C et al (2015) Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain. Biomed Opt Express 6:4546–4556PubMedPubMedCentral
Zurück zum Zitat Bootman MD, Allman S, Rietdorf K, Bultynck G (2018) Deleterious effects of calcium indicators within cells; an inconvenient truth. Cell Calcium 73:82–87PubMed Bootman MD, Allman S, Rietdorf K, Bultynck G (2018) Deleterious effects of calcium indicators within cells; an inconvenient truth. Cell Calcium 73:82–87PubMed
Zurück zum Zitat Broussard GJ, Liang Y, Fridman M et al (2018) In vivo measurement of afferent activity with axon-specific calcium imaging. Nat Neurosci 21:1272–1280PubMedPubMedCentral Broussard GJ, Liang Y, Fridman M et al (2018) In vivo measurement of afferent activity with axon-specific calcium imaging. Nat Neurosci 21:1272–1280PubMedPubMedCentral
Zurück zum Zitat Burgess CR, Ramesh RN, Sugden AU et al (2016) Hunger-dependent enhancement of food cue responses in mouse postrhinal cortex and lateral amygdala. Neuron 91:1154–1169PubMedPubMedCentral Burgess CR, Ramesh RN, Sugden AU et al (2016) Hunger-dependent enhancement of food cue responses in mouse postrhinal cortex and lateral amygdala. Neuron 91:1154–1169PubMedPubMedCentral
Zurück zum Zitat Cai DJ, Aharoni D, Shuman T et al (2016) A shared neural ensemble links distinct contextual memories encoded close in time. Nature 534:115–118PubMedPubMedCentral Cai DJ, Aharoni D, Shuman T et al (2016) A shared neural ensemble links distinct contextual memories encoded close in time. Nature 534:115–118PubMedPubMedCentral
Zurück zum Zitat Carrillo-Reid L, Han S, Yang W et al (2019) Controlling visually guided behavior by holographic recalling of cortical ensembles. Cell 178:447–457.e5PubMedPubMedCentral Carrillo-Reid L, Han S, Yang W et al (2019) Controlling visually guided behavior by holographic recalling of cortical ensembles. Cell 178:447–457.e5PubMedPubMedCentral
Zurück zum Zitat Chatterjee S, Sullivan HA, MacLennan BJ et al (2018) Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons. Nat Neurosci 21:638–646PubMedPubMedCentral Chatterjee S, Sullivan HA, MacLennan BJ et al (2018) Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons. Nat Neurosci 21:638–646PubMedPubMedCentral
Zurück zum Zitat Chen JL, Nedivi E (2010) Neuronal structural remodeling: is it all about access? Curr Opin Neurobiol 20:557–562PubMedPubMedCentral Chen JL, Nedivi E (2010) Neuronal structural remodeling: is it all about access? Curr Opin Neurobiol 20:557–562PubMedPubMedCentral
Zurück zum Zitat Chen JL, Carta S, Soldado-Magraner J et al (2013a) Behaviour-dependent recruitment of long-range projection neurons in somatosensory cortex. Nature 499:336–340PubMed Chen JL, Carta S, Soldado-Magraner J et al (2013a) Behaviour-dependent recruitment of long-range projection neurons in somatosensory cortex. Nature 499:336–340PubMed
Zurück zum Zitat Chen T-W, Wardill TJ, Sun Y et al (2013b) Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499:295–300PubMedPubMedCentral Chen T-W, Wardill TJ, Sun Y et al (2013b) Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499:295–300PubMedPubMedCentral
Zurück zum Zitat Chen JL, Margolis DJ, Stankov A et al (2015a) Pathway-specific reorganization of projection neurons in somatosensory cortex during learning. Nat Neurosci 18:1101–1108PubMed Chen JL, Margolis DJ, Stankov A et al (2015a) Pathway-specific reorganization of projection neurons in somatosensory cortex during learning. Nat Neurosci 18:1101–1108PubMed
Zurück zum Zitat Chen SX, Kim AN, Peters AJ, Komiyama T (2015b) Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning. Nat Neurosci 18:1109–1115PubMedPubMedCentral Chen SX, Kim AN, Peters AJ, Komiyama T (2015b) Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning. Nat Neurosci 18:1109–1115PubMedPubMedCentral
Zurück zum Zitat Chen JL, Voigt FF, Javadzadeh M et al (2016) Long-range population dynamics of anatomically defined neocortical networks. Elife 5:e14679PubMedPubMedCentral Chen JL, Voigt FF, Javadzadeh M et al (2016) Long-range population dynamics of anatomically defined neocortical networks. Elife 5:e14679PubMedPubMedCentral
Zurück zum Zitat Clopath C, Bonhoeffer T, Hübener M, Rose T (2017) Variance and invariance of neuronal long-term representations. Philos Trans R Soc B Biol Sci 372:20160161 Clopath C, Bonhoeffer T, Hübener M, Rose T (2017) Variance and invariance of neuronal long-term representations. Philos Trans R Soc B Biol Sci 372:20160161
Zurück zum Zitat Crochet S, Lee S-H, Petersen CCH (2018) Neural circuits for goal-directed sensorimotor transformations. Trends Neurosci 42:66–77PubMed Crochet S, Lee S-H, Petersen CCH (2018) Neural circuits for goal-directed sensorimotor transformations. Trends Neurosci 42:66–77PubMed
Zurück zum Zitat Crowe SE, Ellis-Davies GCR (2014) Longitudinal in vivo two-photon fluorescence imaging. J Comp Neurol 522:1708–1727PubMedPubMedCentral Crowe SE, Ellis-Davies GCR (2014) Longitudinal in vivo two-photon fluorescence imaging. J Comp Neurol 522:1708–1727PubMedPubMedCentral
Zurück zum Zitat Daigle TL, Madisen L, Hage TA et al (2018) A suite of transgenic driver and reporter mouse lines with enhanced brain-cell-type targeting and functionality. Cell 174:465–480.e22PubMedPubMedCentral Daigle TL, Madisen L, Hage TA et al (2018) A suite of transgenic driver and reporter mouse lines with enhanced brain-cell-type targeting and functionality. Cell 174:465–480.e22PubMedPubMedCentral
Zurück zum Zitat Dana H, Chen T-W, Hu A et al (2014) Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo. PLoS ONE 9:e108697PubMedPubMedCentral Dana H, Chen T-W, Hu A et al (2014) Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo. PLoS ONE 9:e108697PubMedPubMedCentral
Zurück zum Zitat Dana H, Mohar B, Sun Y et al (2016) Sensitive red protein calcium indicators for imaging neural activity. Elife 5:e12727PubMedPubMedCentral Dana H, Mohar B, Sun Y et al (2016) Sensitive red protein calcium indicators for imaging neural activity. Elife 5:e12727PubMedPubMedCentral
Zurück zum Zitat Dana H, Novak O, Guardado-Montesino M et al (2018) Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo. PLoS One 13:e0205444PubMedPubMedCentral Dana H, Novak O, Guardado-Montesino M et al (2018) Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo. PLoS One 13:e0205444PubMedPubMedCentral
Zurück zum Zitat Dana H, Sun Y, Mohar B et al (2019) High-performance calcium sensors for imaging activity in neuronal populations and microcompartments. Nat Methods 16:649–657PubMed Dana H, Sun Y, Mohar B et al (2019) High-performance calcium sensors for imaging activity in neuronal populations and microcompartments. Nat Methods 16:649–657PubMed
Zurück zum Zitat Denk W, Svoboda K (1997) Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron 18:351–357PubMed Denk W, Svoboda K (1997) Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron 18:351–357PubMed
Zurück zum Zitat Dhawale AK, Poddar R, Wolff SB et al (2017) Automated long-term recording and analysis of neural activity in behaving animals. Elife 6:e27702PubMedPubMedCentral Dhawale AK, Poddar R, Wolff SB et al (2017) Automated long-term recording and analysis of neural activity in behaving animals. Elife 6:e27702PubMedPubMedCentral
Zurück zum Zitat Dombeck D, Tank D (2014) Two-photon imaging of neural activity in awake mobile mice. Cold Spring Harb Protoc 2014:726–736PubMed Dombeck D, Tank D (2014) Two-photon imaging of neural activity in awake mobile mice. Cold Spring Harb Protoc 2014:726–736PubMed
Zurück zum Zitat Dombeck DA, Harvey CD, Tian L et al (2010) Functional imaging of hippocampal place cells at cellular resolution during virtual navigation. Nat Neurosci 13:1433–1440PubMedPubMedCentral Dombeck DA, Harvey CD, Tian L et al (2010) Functional imaging of hippocampal place cells at cellular resolution during virtual navigation. Nat Neurosci 13:1433–1440PubMedPubMedCentral
Zurück zum Zitat Driscoll LN, Pettit NL, Minderer M et al (2017) Dynamic reorganization of neuronal activity patterns in parietal cortex. Cell 170:986–999.e16PubMedPubMedCentral Driscoll LN, Pettit NL, Minderer M et al (2017) Dynamic reorganization of neuronal activity patterns in parietal cortex. Cell 170:986–999.e16PubMedPubMedCentral
Zurück zum Zitat Eyo UB, Mo M, Yi M-H et al (2018) P2Y12R-dependent translocation mechanisms gate the changing microglial landscape. Cell Rep 23:959–966PubMedPubMedCentral Eyo UB, Mo M, Yi M-H et al (2018) P2Y12R-dependent translocation mechanisms gate the changing microglial landscape. Cell Rep 23:959–966PubMedPubMedCentral
Zurück zum Zitat Feng J, Zhang C, Lischinsky JE et al (2019) A genetically encoded fluorescent sensor for rapid and specific in vivo detection of norepinephrine. Neuron 102:745–761.e8PubMedPubMedCentral Feng J, Zhang C, Lischinsky JE et al (2019) A genetically encoded fluorescent sensor for rapid and specific in vivo detection of norepinephrine. Neuron 102:745–761.e8PubMedPubMedCentral
Zurück zum Zitat Flusberg BA, Nimmerjahn A, Cocker ED et al (2008) High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods 5:935–938PubMedPubMedCentral Flusberg BA, Nimmerjahn A, Cocker ED et al (2008) High-speed, miniaturized fluorescence microscopy in freely moving mice. Nat Methods 5:935–938PubMedPubMedCentral
Zurück zum Zitat Frank AC, Huang S, Zhou M et al (2018) Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory. Nat Commun 9:422PubMedPubMedCentral Frank AC, Huang S, Zhou M et al (2018) Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory. Nat Commun 9:422PubMedPubMedCentral
Zurück zum Zitat Fu M, Yu X, Lu J, Zuo Y (2012) Repetitive motor learning induces coordinated formation of clustered dendritic spines in vivo. Nature 483:92–95PubMedPubMedCentral Fu M, Yu X, Lu J, Zuo Y (2012) Repetitive motor learning induces coordinated formation of clustered dendritic spines in vivo. Nature 483:92–95PubMedPubMedCentral
Zurück zum Zitat Fu T-M, Hong G, Zhou T et al (2016) Stable long-term chronic brain mapping at the single-neuron level. Nat Methods 13:875–882PubMed Fu T-M, Hong G, Zhou T et al (2016) Stable long-term chronic brain mapping at the single-neuron level. Nat Methods 13:875–882PubMed
Zurück zum Zitat Gdalyahu A, Tring E, Polack P-O et al (2012) Associative fear learning enhances sparse network coding in primary sensory cortex. Neuron 75:121–132PubMedPubMedCentral Gdalyahu A, Tring E, Polack P-O et al (2012) Associative fear learning enhances sparse network coding in primary sensory cortex. Neuron 75:121–132PubMedPubMedCentral
Zurück zum Zitat Ghanbari L, Carter RE, Rynes ML et al (2019) Cortex-wide neural interfacing via transparent polymer skulls. Nat Commun 10:1500PubMedPubMedCentral Ghanbari L, Carter RE, Rynes ML et al (2019) Cortex-wide neural interfacing via transparent polymer skulls. Nat Commun 10:1500PubMedPubMedCentral
Zurück zum Zitat Giovannucci A, Friedrich J, Gunn P et al (2019) CaImAn an open source tool for scalable calcium imaging data analysis. Elife 8:e38173PubMedPubMedCentral Giovannucci A, Friedrich J, Gunn P et al (2019) CaImAn an open source tool for scalable calcium imaging data analysis. Elife 8:e38173PubMedPubMedCentral
Zurück zum Zitat Glausier JR, Lewis DA (2013) Dendritic spine pathology in schizophrenia. Neuroscience 251:90–107PubMed Glausier JR, Lewis DA (2013) Dendritic spine pathology in schizophrenia. Neuroscience 251:90–107PubMed
Zurück zum Zitat Glickfeld LL, Andermann ML, Bonin V, Reid RC (2013) Cortico-cortical projections in mouse visual cortex are functionally target specific. Nat Neurosci 16:219–226PubMed Glickfeld LL, Andermann ML, Bonin V, Reid RC (2013) Cortico-cortical projections in mouse visual cortex are functionally target specific. Nat Neurosci 16:219–226PubMed
Zurück zum Zitat Goldey GJ, Roumis DK, Glickfeld LL et al (2014) Removable cranial windows for long-term imaging in awake mice. Nat Protoc 9:2515–2538PubMedPubMedCentral Goldey GJ, Roumis DK, Glickfeld LL et al (2014) Removable cranial windows for long-term imaging in awake mice. Nat Protoc 9:2515–2538PubMedPubMedCentral
Zurück zum Zitat Gong Y, Huang C, Li JZ et al (2015) High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor. Science 350:1361–1366PubMedPubMedCentral Gong Y, Huang C, Li JZ et al (2015) High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor. Science 350:1361–1366PubMedPubMedCentral
Zurück zum Zitat Grewe BF, Gründemann J, Kitch LJ et al (2017) Neural ensemble dynamics underlying a long-term associative memory. Nature 543:670–675PubMedPubMedCentral Grewe BF, Gründemann J, Kitch LJ et al (2017) Neural ensemble dynamics underlying a long-term associative memory. Nature 543:670–675PubMedPubMedCentral
Zurück zum Zitat Grienberger C, Konnerth A (2012) Imaging calcium in neurons. Neuron 73:862–885PubMed Grienberger C, Konnerth A (2012) Imaging calcium in neurons. Neuron 73:862–885PubMed
Zurück zum Zitat Grutzendler J, Kasthuri N, Gan W-B (2002) Long-term dendritic spine stability in the adult cortex. Nature 420:812–816PubMed Grutzendler J, Kasthuri N, Gan W-B (2002) Long-term dendritic spine stability in the adult cortex. Nature 420:812–816PubMed
Zurück zum Zitat Guo ZV, Li N, Huber D et al (2014) Flow of cortical activity underlying a tactile decision in mice. Neuron 81:179–194PubMed Guo ZV, Li N, Huber D et al (2014) Flow of cortical activity underlying a tactile decision in mice. Neuron 81:179–194PubMed
Zurück zum Zitat Hainmueller T, Bartos M (2018) Parallel emergence of stable and dynamic memory engrams in the hippocampus. Nature 558:292–296PubMedPubMedCentral Hainmueller T, Bartos M (2018) Parallel emergence of stable and dynamic memory engrams in the hippocampus. Nature 558:292–296PubMedPubMedCentral
Zurück zum Zitat Hamel EJO, Grewe BF, Parker JG, Schnitzer MJ (2015) Cellular level brain imaging in behaving mammals: an engineering approach. Neuron 86:140–159PubMedPubMedCentral Hamel EJO, Grewe BF, Parker JG, Schnitzer MJ (2015) Cellular level brain imaging in behaving mammals: an engineering approach. Neuron 86:140–159PubMedPubMedCentral
Zurück zum Zitat Helmchen F, Denk W (2005) Deep tissue two-photon microscopy. Nat methods 2:932–940PubMed Helmchen F, Denk W (2005) Deep tissue two-photon microscopy. Nat methods 2:932–940PubMed
Zurück zum Zitat Hill RA, Damisah EC, Chen F et al (2017) Targeted two-photon chemical apoptotic ablation of defined cell types in vivo. Nat Commun 8:15837PubMedPubMedCentral Hill RA, Damisah EC, Chen F et al (2017) Targeted two-photon chemical apoptotic ablation of defined cell types in vivo. Nat Commun 8:15837PubMedPubMedCentral
Zurück zum Zitat Hill RA, Li AM, Grutzendler J (2018) Lifelong cortical myelin plasticity and age-related degeneration in the live mammalian brain. Nat Neurosci 21:683–695PubMedPubMedCentral Hill RA, Li AM, Grutzendler J (2018) Lifelong cortical myelin plasticity and age-related degeneration in the live mammalian brain. Nat Neurosci 21:683–695PubMedPubMedCentral
Zurück zum Zitat Hires SA, Tian L, Looger LL (2008) Reporting neural activity with genetically encoded calcium indicators. Brain Cell Biol 36:69–86PubMedPubMedCentral Hires SA, Tian L, Looger LL (2008) Reporting neural activity with genetically encoded calcium indicators. Brain Cell Biol 36:69–86PubMedPubMedCentral
Zurück zum Zitat Hochbaum DR, Zhao Y, Farhi SL et al (2014) All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nat Methods 11:825–833PubMedPubMedCentral Hochbaum DR, Zhao Y, Farhi SL et al (2014) All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nat Methods 11:825–833PubMedPubMedCentral
Zurück zum Zitat Holtmaat A, Svoboda K (2009) Experience-dependent structural synaptic plasticity in the mammalian brain. Nat Rev Neurosci 10:647–658PubMed Holtmaat A, Svoboda K (2009) Experience-dependent structural synaptic plasticity in the mammalian brain. Nat Rev Neurosci 10:647–658PubMed
Zurück zum Zitat Holtmaat A, Wilbrecht L, Knott GW et al (2006) Experience-dependent and cell-type-specific spine growth in the neocortex. Nature 441:979–983PubMed Holtmaat A, Wilbrecht L, Knott GW et al (2006) Experience-dependent and cell-type-specific spine growth in the neocortex. Nature 441:979–983PubMed
Zurück zum Zitat Huang C, Maxey JR, Sinha S et al (2018) Long-term optical brain imaging in live adult fruit flies. Nat Commun 9:872PubMedPubMedCentral Huang C, Maxey JR, Sinha S et al (2018) Long-term optical brain imaging in live adult fruit flies. Nat Commun 9:872PubMedPubMedCentral
Zurück zum Zitat Huber D, Gutnisky DA, Peron S et al (2012) Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature 484:473–478PubMedPubMedCentral Huber D, Gutnisky DA, Peron S et al (2012) Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature 484:473–478PubMedPubMedCentral
Zurück zum Zitat Hui GK, Wong KL, Chavez CM et al (2009) Conditioned tone control of brain reward behavior produces highly specific representational gain in the primary auditory cortex. Neurobiol Learn Mem 92:27–34PubMedPubMedCentral Hui GK, Wong KL, Chavez CM et al (2009) Conditioned tone control of brain reward behavior produces highly specific representational gain in the primary auditory cortex. Neurobiol Learn Mem 92:27–34PubMedPubMedCentral
Zurück zum Zitat Jacob AD, Ramsaran AI, Mocle AJ et al (2018) A compact head-mounted endoscope for in vivo calcium imaging in freely behaving mice. Curr Protoc Neurosci 84:e51PubMed Jacob AD, Ramsaran AI, Mocle AJ et al (2018) A compact head-mounted endoscope for in vivo calcium imaging in freely behaving mice. Curr Protoc Neurosci 84:e51PubMed
Zurück zum Zitat Jing M, Zhang P, Wang G et al (2018) A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies. Nat Biotechnol 36:726–737PubMedPubMedCentral Jing M, Zhang P, Wang G et al (2018) A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies. Nat Biotechnol 36:726–737PubMedPubMedCentral
Zurück zum Zitat Jonckers E, Shah D, Hamaide J et al (2015) The power of using functional fMRI on small rodents to study brain pharmacology and disease. Front Pharmacol 6:231PubMedPubMedCentral Jonckers E, Shah D, Hamaide J et al (2015) The power of using functional fMRI on small rodents to study brain pharmacology and disease. Front Pharmacol 6:231PubMedPubMedCentral
Zurück zum Zitat Jorgenson LA, Newsome WT, Anderson DJ et al (2015) The BRAIN Initiative: developing technology to catalyse neuroscience discovery. Philos Trans R Soc B Biol Sci 370:20140164 Jorgenson LA, Newsome WT, Anderson DJ et al (2015) The BRAIN Initiative: developing technology to catalyse neuroscience discovery. Philos Trans R Soc B Biol Sci 370:20140164
Zurück zum Zitat Jung JC, Mehta AD, Aksay E et al (2004) In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy. J Neurophysiol 92:3121–3133PubMed Jung JC, Mehta AD, Aksay E et al (2004) In vivo mammalian brain imaging using one- and two-photon fluorescence microendoscopy. J Neurophysiol 92:3121–3133PubMed
Zurück zum Zitat Katlowitz KA, Picardo MA, Long MA (2018) Stable sequential activity underlying the maintenance of a precisely executed skilled behavior. Neuron 98:1133–1140.e3PubMedPubMedCentral Katlowitz KA, Picardo MA, Long MA (2018) Stable sequential activity underlying the maintenance of a precisely executed skilled behavior. Neuron 98:1133–1140.e3PubMedPubMedCentral
Zurück zum Zitat Kato HK, Chu MW, Isaacson JS, Komiyama T (2012) Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron 76:962–975PubMedPubMedCentral Kato HK, Chu MW, Isaacson JS, Komiyama T (2012) Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience. Neuron 76:962–975PubMedPubMedCentral
Zurück zum Zitat Kerr JND, Denk W (2008) Imaging in vivo: watching the brain in action. Nat Rev Neurosci 9:195–205PubMed Kerr JND, Denk W (2008) Imaging in vivo: watching the brain in action. Nat Rev Neurosci 9:195–205PubMed
Zurück zum Zitat Khambhati AN, Sizemore AE, Betzel RF, Bassett DS (2018) Modeling and interpreting mesoscale network dynamics. NeuroImage 180:337–349PubMed Khambhati AN, Sizemore AE, Betzel RF, Bassett DS (2018) Modeling and interpreting mesoscale network dynamics. NeuroImage 180:337–349PubMed
Zurück zum Zitat Kim TH, Zhang Y, Lecoq J et al (2016) Long-term optical access to an estimated one million neurons in the live mouse cortex. Cell reports 17:3385–3394PubMed Kim TH, Zhang Y, Lecoq J et al (2016) Long-term optical access to an estimated one million neurons in the live mouse cortex. Cell reports 17:3385–3394PubMed
Zurück zum Zitat Knobloch M, Mansuy IM (2008) Dendritic spine loss and synaptic alterations in Alzheimer’s disease. Mol Neurobiol 37:73–82PubMed Knobloch M, Mansuy IM (2008) Dendritic spine loss and synaptic alterations in Alzheimer’s disease. Mol Neurobiol 37:73–82PubMed
Zurück zum Zitat Knöpfel T, Tomita K, Shimazaki R, Sakai R (2003) Optical recordings of membrane potential using genetically targeted voltage-sensitive fluorescent proteins. Methods 30:42–48PubMed Knöpfel T, Tomita K, Shimazaki R, Sakai R (2003) Optical recordings of membrane potential using genetically targeted voltage-sensitive fluorescent proteins. Methods 30:42–48PubMed
Zurück zum Zitat Kolasinski J, Makin TR, Jbabdi S et al (2016) Investigating the stability of fine-grain digit somatotopy in individual human participants. J Neurosci Off J Soc Neurosci 36:1113–1127 Kolasinski J, Makin TR, Jbabdi S et al (2016) Investigating the stability of fine-grain digit somatotopy in individual human participants. J Neurosci Off J Soc Neurosci 36:1113–1127
Zurück zum Zitat Komiyama T, Sato TR, O’Connor DH et al (2010) Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature 464:1182–1186PubMed Komiyama T, Sato TR, O’Connor DH et al (2010) Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature 464:1182–1186PubMed
Zurück zum Zitat Kuhlman SJ, O’Connor DH, Fox K, Svoboda K (2014) Structural plasticity within the barrel cortex during initial phases of whisker-dependent learning. J Neurosci Off J Soc Neurosci 34:6078–6083 Kuhlman SJ, O’Connor DH, Fox K, Svoboda K (2014) Structural plasticity within the barrel cortex during initial phases of whisker-dependent learning. J Neurosci Off J Soc Neurosci 34:6078–6083
Zurück zum Zitat Kupferschmidt DA, Juczewski K, Cui G et al (2017) Parallel, but dissociable, processing in discrete corticostriatal inputs encodes skill learning. Neuron 96:476–489.e5PubMedPubMedCentral Kupferschmidt DA, Juczewski K, Cui G et al (2017) Parallel, but dissociable, processing in discrete corticostriatal inputs encodes skill learning. Neuron 96:476–489.e5PubMedPubMedCentral
Zurück zum Zitat Lacasa L, Luque B, Ballesteros F et al (2008) From time series to complex networks: the visibility graph. Proc Natl Acad Sci United States Am 105:4972–4975 Lacasa L, Luque B, Ballesteros F et al (2008) From time series to complex networks: the visibility graph. Proc Natl Acad Sci United States Am 105:4972–4975
Zurück zum Zitat Lacefield CO, Pnevmatikakis EA, Paninski L, Bruno RM (2019) Reinforcement learning recruits somata and apical dendrites across layers of primary sensory cortex. Cell reports 26:2000–2008.e2PubMed Lacefield CO, Pnevmatikakis EA, Paninski L, Bruno RM (2019) Reinforcement learning recruits somata and apical dendrites across layers of primary sensory cortex. Cell reports 26:2000–2008.e2PubMed
Zurück zum Zitat Lai CSW, Franke TF, Gan W-B (2012) Opposite effects of fear conditioning and extinction on dendritic spine remodelling. Nature 483:87–91PubMed Lai CSW, Franke TF, Gan W-B (2012) Opposite effects of fear conditioning and extinction on dendritic spine remodelling. Nature 483:87–91PubMed
Zurück zum Zitat Lai CSW, Adler A, Gan W-B (2018) Fear extinction reverses dendritic spine formation induced by fear conditioning in the mouse auditory cortex. Proc Natl Acad Sci USA 115:9306–9311PubMedPubMedCentral Lai CSW, Adler A, Gan W-B (2018) Fear extinction reverses dendritic spine formation induced by fear conditioning in the mouse auditory cortex. Proc Natl Acad Sci USA 115:9306–9311PubMedPubMedCentral
Zurück zum Zitat Le Merre P, Esmaeili V, Charrière E et al (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron 97:83–91.e5PubMedPubMedCentral Le Merre P, Esmaeili V, Charrière E et al (2018) Reward-based learning drives rapid sensory signals in medial prefrontal cortex and dorsal hippocampus necessary for goal-directed behavior. Neuron 97:83–91.e5PubMedPubMedCentral
Zurück zum Zitat Lecoq J, Savall J, Vučinić D et al (2014) Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging. Nat Neurosci 17:1825–1829PubMedPubMedCentral Lecoq J, Savall J, Vučinić D et al (2014) Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging. Nat Neurosci 17:1825–1829PubMedPubMedCentral
Zurück zum Zitat LeMessurier AM, Feldman DE (2018) Plasticity of population coding in primary sensory cortex. Curr Opin Neurobiol 53:50–56PubMedPubMedCentral LeMessurier AM, Feldman DE (2018) Plasticity of population coding in primary sensory cortex. Curr Opin Neurobiol 53:50–56PubMedPubMedCentral
Zurück zum Zitat Livneh Y, Ramesh RN, Burgess CR et al (2017) Homeostatic circuits selectively gate food cue responses in insular cortex. Nature 546:611–616PubMedPubMedCentral Livneh Y, Ramesh RN, Burgess CR et al (2017) Homeostatic circuits selectively gate food cue responses in insular cortex. Nature 546:611–616PubMedPubMedCentral
Zurück zum Zitat Low RJ, Gu Y, Tank DW (2014) Cellular resolution optical access to brain regions in fissures: imaging medial prefrontal cortex and grid cells in entorhinal cortex. Proc Natl Acad Sci USA 111:18739–18744PubMedPubMedCentral Low RJ, Gu Y, Tank DW (2014) Cellular resolution optical access to brain regions in fissures: imaging medial prefrontal cortex and grid cells in entorhinal cortex. Proc Natl Acad Sci USA 111:18739–18744PubMedPubMedCentral
Zurück zum Zitat Lu R, Sun W, Liang Y et al (2017) Video-rate volumetric functional imaging of the brain at synaptic resolution. Nat Neurosci 20:620–628PubMedPubMedCentral Lu R, Sun W, Liang Y et al (2017) Video-rate volumetric functional imaging of the brain at synaptic resolution. Nat Neurosci 20:620–628PubMedPubMedCentral
Zurück zum Zitat Lütcke H, Margolis DJ, Helmchen F (2013) Steady or changing? Long-term monitoring of neuronal population activity. Trends Neurosci 36:375–384PubMed Lütcke H, Margolis DJ, Helmchen F (2013) Steady or changing? Long-term monitoring of neuronal population activity. Trends Neurosci 36:375–384PubMed
Zurück zum Zitat Madisen L, Garner AR, Shimaoka D et al (2015) Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron 85:942–958PubMedPubMedCentral Madisen L, Garner AR, Shimaoka D et al (2015) Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron 85:942–958PubMedPubMedCentral
Zurück zum Zitat Makino H, Hwang EJ, Hedrick NG, Komiyama T (2016) Circuit mechanisms of sensorimotor learning. Neuron 92:705–721PubMedPubMedCentral Makino H, Hwang EJ, Hedrick NG, Komiyama T (2016) Circuit mechanisms of sensorimotor learning. Neuron 92:705–721PubMedPubMedCentral
Zurück zum Zitat Makino H, Ren C, Liu H et al (2017) Transformation of cortex-wide emergent properties during motor learning. Neuron 94:880–890.e8PubMedPubMedCentral Makino H, Ren C, Liu H et al (2017) Transformation of cortex-wide emergent properties during motor learning. Neuron 94:880–890.e8PubMedPubMedCentral
Zurück zum Zitat Mank M, Santos AF, Direnberger S et al (2008) A genetically encoded calcium indicator for chronic in vivo two-photon imaging. Nat Methods 5:805–811PubMed Mank M, Santos AF, Direnberger S et al (2008) A genetically encoded calcium indicator for chronic in vivo two-photon imaging. Nat Methods 5:805–811PubMed
Zurück zum Zitat Margolis DJ, Lütcke H, Helmchen F et al (2011) Chronic two-photon imaging of neural activity in the anesthetized and awake behaving rodent. Optical imaging of neocortical dynamics. Humana Press, Totowa, pp 151–173 Margolis DJ, Lütcke H, Helmchen F et al (2011) Chronic two-photon imaging of neural activity in the anesthetized and awake behaving rodent. Optical imaging of neocortical dynamics. Humana Press, Totowa, pp 151–173
Zurück zum Zitat Margolis DJ, Lütcke H, Schulz K et al (2012) Reorganization of cortical population activity imaged throughout long-term sensory deprivation. Nat Neurosci 15:1539–1546PubMed Margolis DJ, Lütcke H, Schulz K et al (2012) Reorganization of cortical population activity imaged throughout long-term sensory deprivation. Nat Neurosci 15:1539–1546PubMed
Zurück zum Zitat Margolis DJ, Lütcke H, Helmchen F (2014) Microcircuit dynamics of map plasticity in barrel cortex. Curr Opin Neurobiol 24:76–81PubMed Margolis DJ, Lütcke H, Helmchen F (2014) Microcircuit dynamics of map plasticity in barrel cortex. Curr Opin Neurobiol 24:76–81PubMed
Zurück zum Zitat Marshel JH, Kim YS, Machado TA et al (2019) Cortical layer-specific critical dynamics triggering perception. Science 365:eaaw5202PubMedPubMedCentral Marshel JH, Kim YS, Machado TA et al (2019) Cortical layer-specific critical dynamics triggering perception. Science 365:eaaw5202PubMedPubMedCentral
Zurück zum Zitat Martínez-Cerdeño V (2017) Dendrite and spine modifications in autism and related neurodevelopmental disorders in patients and animal models. Dev Neurobiol 77:393–404PubMed Martínez-Cerdeño V (2017) Dendrite and spine modifications in autism and related neurodevelopmental disorders in patients and animal models. Dev Neurobiol 77:393–404PubMed
Zurück zum Zitat Marvin JS, Borghuis BG, Tian L et al (2013) An optimized fluorescent probe for visualizing glutamate neurotransmission. Nat Methods 10:162–170PubMedPubMedCentral Marvin JS, Borghuis BG, Tian L et al (2013) An optimized fluorescent probe for visualizing glutamate neurotransmission. Nat Methods 10:162–170PubMedPubMedCentral
Zurück zum Zitat Marvin JS, Shimoda Y, Magloire V, et al (2019) A genetically encoded fluorescent sensor for in vivo imaging of GABA Marvin JS, Shimoda Y, Magloire V, et al (2019) A genetically encoded fluorescent sensor for in vivo imaging of GABA
Zurück zum Zitat Mayrhofer JM, Haiss F, Helmchen F, Weber B (2015) Sparse, reliable, and long-term stable representation of periodic whisker deflections in the mouse barrel cortex. NeuroImage 115:52–63PubMed Mayrhofer JM, Haiss F, Helmchen F, Weber B (2015) Sparse, reliable, and long-term stable representation of periodic whisker deflections in the mouse barrel cortex. NeuroImage 115:52–63PubMed
Zurück zum Zitat McGinley MJ, Vinck M, Reimer J et al (2015) Waking state: rapid variations modulate neural and behavioral responses. Neuron 87:1143–1161PubMedPubMedCentral McGinley MJ, Vinck M, Reimer J et al (2015) Waking state: rapid variations modulate neural and behavioral responses. Neuron 87:1143–1161PubMedPubMedCentral
Zurück zum Zitat McMahon SM, Jackson MB (2018) An inconvenient truth: calcium sensors are calcium buffers. Trends Neurosci 41:880–884PubMedPubMedCentral McMahon SM, Jackson MB (2018) An inconvenient truth: calcium sensors are calcium buffers. Trends Neurosci 41:880–884PubMedPubMedCentral
Zurück zum Zitat McVea DA, Murphy TH, Mohajerani MH (2016) Large scale cortical functional networks associated with slow-wave and spindle-burst-related spontaneous activity. Front Neural Circuits 10:103PubMedPubMedCentral McVea DA, Murphy TH, Mohajerani MH (2016) Large scale cortical functional networks associated with slow-wave and spindle-burst-related spontaneous activity. Front Neural Circuits 10:103PubMedPubMedCentral
Zurück zum Zitat Musall S, Kaufman MT, Juavinett AL, Gluf S, Churchland AK (2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci 22:1677–1686PubMedPubMedCentral Musall S, Kaufman MT, Juavinett AL, Gluf S, Churchland AK (2019) Single-trial neural dynamics are dominated by richly varied movements. Nat Neurosci 22:1677–1686PubMedPubMedCentral
Zurück zum Zitat Nöbauer T, Skocek O, Pernía-Andrade AJ et al (2017) Video rate volumetric Ca imaging across cortex using seeded iterative demixing (SID) microscopy. Nat Methods 14:811–818PubMed Nöbauer T, Skocek O, Pernía-Andrade AJ et al (2017) Video rate volumetric Ca imaging across cortex using seeded iterative demixing (SID) microscopy. Nat Methods 14:811–818PubMed
Zurück zum Zitat Ouzounov DG, Wang T, Wang M et al (2017) In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nat Methods 14:388–390PubMedPubMedCentral Ouzounov DG, Wang T, Wang M et al (2017) In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nat Methods 14:388–390PubMedPubMedCentral
Zurück zum Zitat Ovsepian SV (2019) The dark matter of the brain. Brain Struct Funct 224:973–983PubMed Ovsepian SV (2019) The dark matter of the brain. Brain Struct Funct 224:973–983PubMed
Zurück zum Zitat Ovsepian SV, Olefir I, Westmeyer G et al (2017) Pushing the boundaries of neuroimaging with optoacoustics. Neuron 96:966–988PubMed Ovsepian SV, Olefir I, Westmeyer G et al (2017) Pushing the boundaries of neuroimaging with optoacoustics. Neuron 96:966–988PubMed
Zurück zum Zitat Pachitariu M, Stringer C, Harris KD (2018) Robustness of spike deconvolution for neuronal calcium imaging. J Neurosci Off J Soc Neurosci 38:7976–7985 Pachitariu M, Stringer C, Harris KD (2018) Robustness of spike deconvolution for neuronal calcium imaging. J Neurosci Off J Soc Neurosci 38:7976–7985
Zurück zum Zitat Paninski L, Cunningham JP (2018) Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience. Curr Opin Neurobiol 50:232–241PubMed Paninski L, Cunningham JP (2018) Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience. Curr Opin Neurobiol 50:232–241PubMed
Zurück zum Zitat Patel TP, Man K, Firestein BL, Meaney DF (2015) Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging. J Neurosci Methods 243:26–38PubMedPubMedCentral Patel TP, Man K, Firestein BL, Meaney DF (2015) Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging. J Neurosci Methods 243:26–38PubMedPubMedCentral
Zurück zum Zitat Patriarchi T, Cho JR, Merten K et al (2018) Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors. Science 360:eaat442 Patriarchi T, Cho JR, Merten K et al (2018) Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors. Science 360:eaat442
Zurück zum Zitat Peron SP, Freeman J, Iyer V et al (2015) A cellular resolution map of barrel cortex activity during tactile behavior. Neuron 86:783–799PubMed Peron SP, Freeman J, Iyer V et al (2015) A cellular resolution map of barrel cortex activity during tactile behavior. Neuron 86:783–799PubMed
Zurück zum Zitat Peters AJ, Chen SX, Komiyama T (2014) Emergence of reproducible spatiotemporal activity during motor learning. Nature 510:263–267PubMed Peters AJ, Chen SX, Komiyama T (2014) Emergence of reproducible spatiotemporal activity during motor learning. Nature 510:263–267PubMed
Zurück zum Zitat Piatkevich KD, Bensussen S, Tseng HA, Shroff SN, Lopez-Huerta VG, Park D, Jung EE, Shemesh OA, Straub C, Gritton HJ, Romano MF, Costa E, Sabatini BL, Fu Z, Boyden ES, Han X (2019) Population imaging of neural activity in awake behaving mice. Nature 574:413–417PubMedPubMedCentral Piatkevich KD, Bensussen S, Tseng HA, Shroff SN, Lopez-Huerta VG, Park D, Jung EE, Shemesh OA, Straub C, Gritton HJ, Romano MF, Costa E, Sabatini BL, Fu Z, Boyden ES, Han X (2019) Population imaging of neural activity in awake behaving mice. Nature 574:413–417PubMedPubMedCentral
Zurück zum Zitat Pilz G-A, Bottes S, Betizeau M et al (2018) Live imaging of neurogenesis in the adult mouse hippocampus. Science 359:658–662PubMedPubMedCentral Pilz G-A, Bottes S, Betizeau M et al (2018) Live imaging of neurogenesis in the adult mouse hippocampus. Science 359:658–662PubMedPubMedCentral
Zurück zum Zitat Pnevmatikakis EA (2019) Analysis pipelines for calcium imaging data. Curr Opin Neurobiol 55:15–21PubMed Pnevmatikakis EA (2019) Analysis pipelines for calcium imaging data. Curr Opin Neurobiol 55:15–21PubMed
Zurück zum Zitat Pnevmatikakis EA, Soudry D, Gao Y et al (2016) Simultaneous denoising, deconvolution, and demixing of calcium imaging data. Neuron 89:285–299PubMedPubMedCentral Pnevmatikakis EA, Soudry D, Gao Y et al (2016) Simultaneous denoising, deconvolution, and demixing of calcium imaging data. Neuron 89:285–299PubMedPubMedCentral
Zurück zum Zitat Poort J, Khan AG, Pachitariu M et al (2015) Learning enhances sensory and multiple non-sensory representations in primary visual cortex. Neuron 86:1478–1490PubMedPubMedCentral Poort J, Khan AG, Pachitariu M et al (2015) Learning enhances sensory and multiple non-sensory representations in primary visual cortex. Neuron 86:1478–1490PubMedPubMedCentral
Zurück zum Zitat Prakash R, Yizhar O, Grewe B et al (2012) Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Nat Methods 9:1171–1179PubMedPubMedCentral Prakash R, Yizhar O, Grewe B et al (2012) Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Nat Methods 9:1171–1179PubMedPubMedCentral
Zurück zum Zitat Pryazhnikov E, Mugantseva E, Casarotto P et al (2018) Longitudinal two-photon imaging in somatosensory cortex of behaving mice reveals dendritic spine formation enhancement by subchronic administration of low-dose ketamine. Sci reports 8:6464 Pryazhnikov E, Mugantseva E, Casarotto P et al (2018) Longitudinal two-photon imaging in somatosensory cortex of behaving mice reveals dendritic spine formation enhancement by subchronic administration of low-dose ketamine. Sci reports 8:6464
Zurück zum Zitat Ramesh RN, Burgess CR, Sugden AU et al (2018) Intermingled ensembles in visual association cortex encode stimulus identity or predicted outcome. Neuron 100:900–915.e9PubMedPubMedCentral Ramesh RN, Burgess CR, Sugden AU et al (2018) Intermingled ensembles in visual association cortex encode stimulus identity or predicted outcome. Neuron 100:900–915.e9PubMedPubMedCentral
Zurück zum Zitat Real R, Peter M, Trabalza A et al (2018) In vivo modeling of human neuron dynamics and Down syndrome. Science 362:eaau1810PubMedPubMedCentral Real R, Peter M, Trabalza A et al (2018) In vivo modeling of human neuron dynamics and Down syndrome. Science 362:eaau1810PubMedPubMedCentral
Zurück zum Zitat Romo R, de Lafuente V (2013) Conversion of sensory signals into perceptual decisions. Prog Neurobiol 103:41–75PubMed Romo R, de Lafuente V (2013) Conversion of sensory signals into perceptual decisions. Prog Neurobiol 103:41–75PubMed
Zurück zum Zitat Roome CJ, Kuhn B (2014) Chronic cranial window with access port for repeated cellular manipulations, drug application, and electrophysiology. Front Cell Neurosci 8:379PubMedPubMedCentral Roome CJ, Kuhn B (2014) Chronic cranial window with access port for repeated cellular manipulations, drug application, and electrophysiology. Front Cell Neurosci 8:379PubMedPubMedCentral
Zurück zum Zitat Sadakane O, Masamizu Y, Watakabe A et al (2015) Long-term two-photon calcium imaging of neuronal populations with subcellular resolution in adult non-human primates. Cell reports 13:1989–1999PubMed Sadakane O, Masamizu Y, Watakabe A et al (2015) Long-term two-photon calcium imaging of neuronal populations with subcellular resolution in adult non-human primates. Cell reports 13:1989–1999PubMed
Zurück zum Zitat Sasaki T, Takahashi N, Matsuki N, Ikegaya Y (2008) Fast and accurate detection of action potentials from somatic calcium fluctuations. J Neurophysiol 100:1668–1676PubMed Sasaki T, Takahashi N, Matsuki N, Ikegaya Y (2008) Fast and accurate detection of action potentials from somatic calcium fluctuations. J Neurophysiol 100:1668–1676PubMed
Zurück zum Zitat Sato M, Kawano M, Yanagawa Y, Hayashi Y (2016) In vivo two-photon imaging of striatal neuronal circuits in mice. Neurobiol Learn Mem 135:146–151PubMed Sato M, Kawano M, Yanagawa Y, Hayashi Y (2016) In vivo two-photon imaging of striatal neuronal circuits in mice. Neurobiol Learn Mem 135:146–151PubMed
Zurück zum Zitat Shoham S, O’Connor DH, Segev R (2006) How silent is the brain: is there a “dark matter” problem in neuroscience? J Comp Physiol Neuroethol sensory, neural, Behav Physiol 192:777–784 Shoham S, O’Connor DH, Segev R (2006) How silent is the brain: is there a “dark matter” problem in neuroscience? J Comp Physiol Neuroethol sensory, neural, Behav Physiol 192:777–784
Zurück zum Zitat Shuler MG, Bear MF (2006) Reward timing in the primary visual cortex. Sci 311:1606–1609 Shuler MG, Bear MF (2006) Reward timing in the primary visual cortex. Sci 311:1606–1609
Zurück zum Zitat Sofroniew NJ, Flickinger D, King J, Svoboda K (2016) A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging. Elife 5:e14472PubMedPubMedCentral Sofroniew NJ, Flickinger D, King J, Svoboda K (2016) A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging. Elife 5:e14472PubMedPubMedCentral
Zurück zum Zitat Song A, Charles AS, Koay SA et al (2017a) Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nat Methods 14:420–426PubMedPubMedCentral Song A, Charles AS, Koay SA et al (2017a) Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nat Methods 14:420–426PubMedPubMedCentral
Zurück zum Zitat Song C, Barnes S, Knöpfel T (2017b) Mammalian cortical voltage imaging using genetically encoded voltage indicators: a review honoring professor Amiram Grinvald. Neurophotonics 4:031214PubMedPubMedCentral Song C, Barnes S, Knöpfel T (2017b) Mammalian cortical voltage imaging using genetically encoded voltage indicators: a review honoring professor Amiram Grinvald. Neurophotonics 4:031214PubMedPubMedCentral
Zurück zum Zitat Speiser A, Yan J, Archer EW, Buesing L, Turaga SC, Macke JH (2017) Fast amortized inference of neural activity from calcium imaging data with variational autoencoders. Advances in Neural Information Processing Systems 4024–4034 Speiser A, Yan J, Archer EW, Buesing L, Turaga SC, Macke JH (2017) Fast amortized inference of neural activity from calcium imaging data with variational autoencoders. Advances in Neural Information Processing Systems 4024–4034
Zurück zum Zitat Spires TL, Meyer-Luehmann M, Stern EA et al (2005) Dendritic spine abnormalities in amyloid precursor protein transgenic mice demonstrated by gene transfer and intravital multiphoton microscopy. J Neurosci Off J Soc Neurosci 25:7278–7287 Spires TL, Meyer-Luehmann M, Stern EA et al (2005) Dendritic spine abnormalities in amyloid precursor protein transgenic mice demonstrated by gene transfer and intravital multiphoton microscopy. J Neurosci Off J Soc Neurosci 25:7278–7287
Zurück zum Zitat Steinmetz NA, Buetfering C, Lecoq J, et al (2017) Aberrant cortical activity in multiple GCaMP6-expressing transgenic mouse lines Steinmetz NA, Buetfering C, Lecoq J, et al (2017) Aberrant cortical activity in multiple GCaMP6-expressing transgenic mouse lines
Zurück zum Zitat Steinmetz NA, Koch C, Harris KD, Carandini M (2018) Challenges and opportunities for large-scale electrophysiology with Neuropixels probes. Curr Opin Neurobiol 50:92–100PubMedPubMedCentral Steinmetz NA, Koch C, Harris KD, Carandini M (2018) Challenges and opportunities for large-scale electrophysiology with Neuropixels probes. Curr Opin Neurobiol 50:92–100PubMedPubMedCentral
Zurück zum Zitat Stirman JN, Smith IT, Kudenov MW, Smith SL (2016) Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain. Nat Biotechnol 34:857–862PubMedPubMedCentral Stirman JN, Smith IT, Kudenov MW, Smith SL (2016) Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain. Nat Biotechnol 34:857–862PubMedPubMedCentral
Zurück zum Zitat Stringer C, Pachitariu M (2019) Computational processing of neural recordings from calcium imaging data. Curr Opin Neurobiol 55:22–31PubMed Stringer C, Pachitariu M (2019) Computational processing of neural recordings from calcium imaging data. Curr Opin Neurobiol 55:22–31PubMed
Zurück zum Zitat Stringer C, Pachitariu M, Steinmetz N et al (2019) Spontaneous behaviors drive multidimensional, brainwide activity. Sci 364:255 Stringer C, Pachitariu M, Steinmetz N et al (2019) Spontaneous behaviors drive multidimensional, brainwide activity. Sci 364:255
Zurück zum Zitat Takahashi N, Oertner TG, Hegemann P, Larkum ME (2016) Active cortical dendrites modulate perception. Science 354:1587–1590PubMed Takahashi N, Oertner TG, Hegemann P, Larkum ME (2016) Active cortical dendrites modulate perception. Science 354:1587–1590PubMed
Zurück zum Zitat Tervo DGR, Hwang B-Y, Viswanathan S et al (2016) A designer AAV variant permits efficient retrograde access to projection neurons. Neuron 92:372–382PubMedPubMedCentral Tervo DGR, Hwang B-Y, Viswanathan S et al (2016) A designer AAV variant permits efficient retrograde access to projection neurons. Neuron 92:372–382PubMedPubMedCentral
Zurück zum Zitat Theis L, Berens P, Froudarakis E et al (2016) Benchmarking spike rate inference in population calcium imaging. Neuron 90:471–482PubMedPubMedCentral Theis L, Berens P, Froudarakis E et al (2016) Benchmarking spike rate inference in population calcium imaging. Neuron 90:471–482PubMedPubMedCentral
Zurück zum Zitat Tian L, Hires SA, Looger LL (2012) Imaging neuronal activity with genetically encoded calcium indicators. Cold Spring Harb Protoc 2012:647–656PubMed Tian L, Hires SA, Looger LL (2012) Imaging neuronal activity with genetically encoded calcium indicators. Cold Spring Harb Protoc 2012:647–656PubMed
Zurück zum Zitat Trachtenberg JT, Chen BE, Knott GW et al (2002) Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature 420:788–794PubMed Trachtenberg JT, Chen BE, Knott GW et al (2002) Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature 420:788–794PubMed
Zurück zum Zitat Vanni MP, Chan AW, Balbi M et al (2017) Mesoscale mapping of mouse cortex reveals frequency-dependent cycling between distinct macroscale functional modules. J Neurosci Off J Soc Neurosci 37:7513–7533 Vanni MP, Chan AW, Balbi M et al (2017) Mesoscale mapping of mouse cortex reveals frequency-dependent cycling between distinct macroscale functional modules. J Neurosci Off J Soc Neurosci 37:7513–7533
Zurück zum Zitat Voglewede RL, Vandemark KM, Davidson AM et al (2019) Reduced sensory-evoked structural plasticity in the aging barrel cortex. Neurobiol Aging 81:222–233PubMedPubMedCentral Voglewede RL, Vandemark KM, Davidson AM et al (2019) Reduced sensory-evoked structural plasticity in the aging barrel cortex. Neurobiol Aging 81:222–233PubMedPubMedCentral
Zurück zum Zitat Vogt N (2018) Machine learning in neuroscience. Nat methods 15:33 Vogt N (2018) Machine learning in neuroscience. Nat methods 15:33
Zurück zum Zitat Wang KH, Majewska A, Schummers J et al (2006) In vivo two-photon imaging reveals a role of arc in enhancing orientation specificity in visual cortex. Cell 126:389–402PubMed Wang KH, Majewska A, Schummers J et al (2006) In vivo two-photon imaging reveals a role of arc in enhancing orientation specificity in visual cortex. Cell 126:389–402PubMed
Zurück zum Zitat Wekselblatt JB, Flister ED, Piscopo DM, Niell CM (2016) Large-scale imaging of cortical dynamics during sensory perception and behavior. J Neurophysiol 115:2852–2866PubMedPubMedCentral Wekselblatt JB, Flister ED, Piscopo DM, Niell CM (2016) Large-scale imaging of cortical dynamics during sensory perception and behavior. J Neurophysiol 115:2852–2866PubMedPubMedCentral
Zurück zum Zitat Xie Y, Chan AW, McGirr A et al (2016) Resolution of high-frequency mesoscale intracortical maps using the genetically encoded glutamate sensor iGluSnFR. J Neurosci Off J Soc Neurosci 36:1261–1272 Xie Y, Chan AW, McGirr A et al (2016) Resolution of high-frequency mesoscale intracortical maps using the genetically encoded glutamate sensor iGluSnFR. J Neurosci Off J Soc Neurosci 36:1261–1272
Zurück zum Zitat Yamashita T, Pala A, Pedrido L et al (2013) Membrane potential dynamics of neocortical projection neurons driving target-specific signals. Neuron 80:1477–1490PubMed Yamashita T, Pala A, Pedrido L et al (2013) Membrane potential dynamics of neocortical projection neurons driving target-specific signals. Neuron 80:1477–1490PubMed
Zurück zum Zitat Yang HH, St-Pierre F (2016) Genetically Encoded Voltage Indicators: opportunities and Challenges. J Neurosci Off J Soc Neurosci 36:9977–9989 Yang HH, St-Pierre F (2016) Genetically Encoded Voltage Indicators: opportunities and Challenges. J Neurosci Off J Soc Neurosci 36:9977–9989
Zurück zum Zitat Yang G, Pan F, Gan W-B (2009) Stably maintained dendritic spines are associated with lifelong memories. Nature 462:920–924PubMedPubMedCentral Yang G, Pan F, Gan W-B (2009) Stably maintained dendritic spines are associated with lifelong memories. Nature 462:920–924PubMedPubMedCentral
Zurück zum Zitat Yasuda R, Nimchinsky EA, Scheuss V et al (2004) Imaging calcium concentration dynamics in small neuronal compartments. Sci STKE 2004:pl5PubMed Yasuda R, Nimchinsky EA, Scheuss V et al (2004) Imaging calcium concentration dynamics in small neuronal compartments. Sci STKE 2004:pl5PubMed
Zurück zum Zitat Zhu L, Lee CR, Margolis DJ, Najafizadeh L (2018) Decoding cortical brain states from widefield calcium imaging data using visibility graph. Biomed Opt Express 9:3017–3036PubMedPubMedCentral Zhu L, Lee CR, Margolis DJ, Najafizadeh L (2018) Decoding cortical brain states from widefield calcium imaging data using visibility graph. Biomed Opt Express 9:3017–3036PubMedPubMedCentral
Zurück zum Zitat Ziv NE, Brenner N (2018) Synaptic tenacity or lack thereof: spontaneous remodeling of synapses. Trends Neurosci 41:89–99PubMed Ziv NE, Brenner N (2018) Synaptic tenacity or lack thereof: spontaneous remodeling of synapses. Trends Neurosci 41:89–99PubMed
Zurück zum Zitat Ziv Y, Burns LD, Cocker ED et al (2013) Long-term dynamics of CA1 hippocampal place codes. Nat Neurosci 16:264–266PubMedPubMedCentral Ziv Y, Burns LD, Cocker ED et al (2013) Long-term dynamics of CA1 hippocampal place codes. Nat Neurosci 16:264–266PubMedPubMedCentral
Metadaten
Titel
Investigating learning-related neural circuitry with chronic in vivo optical imaging
verfasst von
Christian R. Lee
Laleh Najafizadeh
David J. Margolis
Publikationsdatum
31.01.2020
Verlag
Springer Berlin Heidelberg
Erschienen in
Brain Structure and Function / Ausgabe 2/2020
Print ISSN: 1863-2653
Elektronische ISSN: 1863-2661
DOI
https://doi.org/10.1007/s00429-019-02001-9

Weitere Artikel der Ausgabe 2/2020

Brain Structure and Function 2/2020 Zur Ausgabe

Leitlinien kompakt für die Neurologie

Mit medbee Pocketcards sicher entscheiden.

Seit 2022 gehört die medbee GmbH zum Springer Medizin Verlag

Sozialer Aufstieg verringert Demenzgefahr

24.05.2024 Demenz Nachrichten

Ein hohes soziales Niveau ist mit die beste Versicherung gegen eine Demenz. Noch geringer ist das Demenzrisiko für Menschen, die sozial aufsteigen: Sie gewinnen fast zwei demenzfreie Lebensjahre. Umgekehrt steigt die Demenzgefahr beim sozialen Abstieg.

Hirnblutung unter DOAK und VKA ähnlich bedrohlich

17.05.2024 Direkte orale Antikoagulanzien Nachrichten

Kommt es zu einer nichttraumatischen Hirnblutung, spielt es keine große Rolle, ob die Betroffenen zuvor direkt wirksame orale Antikoagulanzien oder Marcumar bekommen haben: Die Prognose ist ähnlich schlecht.

Was nützt die Kraniektomie bei schwerer tiefer Hirnblutung?

17.05.2024 Hirnblutung Nachrichten

Eine Studie zum Nutzen der druckentlastenden Kraniektomie nach schwerer tiefer supratentorieller Hirnblutung deutet einen Nutzen der Operation an. Für überlebende Patienten ist das dennoch nur eine bedingt gute Nachricht.

Thrombektomie auch bei großen Infarkten von Vorteil

16.05.2024 Ischämischer Schlaganfall Nachrichten

Auch ein sehr ausgedehnter ischämischer Schlaganfall scheint an sich kein Grund zu sein, von einer mechanischen Thrombektomie abzusehen. Dafür spricht die LASTE-Studie, an der Patienten und Patientinnen mit einem ASPECTS von maximal 5 beteiligt waren.

Update Neurologie

Bestellen Sie unseren Fach-Newsletter und bleiben Sie gut informiert.