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International Journal of Legal Medicine

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01.09.2011 | Short Communication

Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast

verfasst von: Serena Pasino, Stefano Caratti, Massimiliano Del Pero, Alfredo Santovito, Carlo Torre, Carlo Robino

Erschienen in: International Journal of Legal Medicine | Ausgabe 5/2011

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Abstract

Twenty-one X-chromosomal short tandem repeat (STR) loci, including the six clusters of linked markers DXS10148–DXS10135–DXS8378 (Xp22), DXS7132–DXS10079–DXS10074 (Xq12), DXS6801–DXS6809–DXS6789 (Xq21), DXS7424–DXS101 (Xq22), DXS10103–HPRTB–DXS10101 (Xq26), DXS8377–DXS10146–DXS10134–DXS7423 (Xq28) and the loci DXS6800, GATA172D05 and DXS10011 were typed in a popula3tion sample from Ivory Coast (n = 125; 51 men and 74 women). Allele and haplotype frequencies as well as linkage disequilibrium data for kinship calculations are provided. On the whole, no significant differences in the genetic variability of X-STR markers were observed between Ivorians and other sub-Saharan African populations belonging to the Niger–Kordofanian linguistic group.

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Szibor R (2007) X-chromosomal markers, past, present and future. Forensic Sci Int Genet 1:93–99PubMedCrossRef

Szibor R, Hering S, Kuhlisch E, Plate I, Demberger S, Krawczak M, Edelmann J (2005) Haplotyping of STR cluster DXS6801–DXS6809–DXS6789 on Xq21 provides a powerful tool for kinship testing. Int J Legal Med 119:363–369PubMedCrossRef

Hering S, Augustin C, Edelmann J et al (2006) DXS10079, DXS10074 and DXS10075 are STRs located within a 280-kb region of Xq12 and provide stable haplotypes useful for complex kinship cases. Int J Legal Med 120:337–345PubMedCrossRef

Schaffner SF (2004) The X chromosome in population genetics. Nat Rev Genet 5:43–51PubMedCrossRef

Gomes I, Alves C, Maxzud K et al (2007) Analysis of 10 XSTRs in three African populations. Forensic Sci Int Genet 1:208–211PubMedCrossRef

Poetsch M, El-Mostaqim D, Tschentscher F, Browne EN, Timmann C, Horstmann RD, Von Wurmb-Schwark N (2009) Allele frequencies of 11 X-chromosomal loci in a population sample from Ghana. Int J Legal Med 123:81–83PubMedCrossRef

Bekada A, Benhamamouch S, Boudjema A, Fodil M, Menegon S, Torre C, Robino C (2010) Analysis of 21 X-chromosomal STRs in an Algerian population sample. Int J Legal Med 124:287–294PubMedCrossRef

Szibor R, Edelmann J, Hering S et al (2003) Cell line DNA typing in forensic genetics—the necessity of reliable standards. Forensic Sci Int 138:37–43PubMedCrossRef

Szibor R, Hering S, Edelmann J (2006) A new Web site compiling forensic chromosome X research is now online. Int J Legal Med 120:252–254PubMedCrossRef

10.

Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50

11.

Bandelt HJ, Forster P, Sykes BC, Richards MB (1995) Mitochondrial portraits of human populations using median networks. Genetics 141:743–753PubMed

12.

Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48PubMed

13.

Hundertmark T, Hering S, Edelmann J, Augustin C, Plate I, Szibor R (2008) The STR cluster DXS10148–DXS8378–DXS10135 provides a powerful tool for X-chromosomal haplotyping at Xp22. Int J Legal Med 122:489–492PubMedCrossRef

14.

Robino C, Crobu F, Di Gaetano C et al (2008) Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample. Int J Legal Med 122:251–255PubMedCrossRef

15.

Plaza S, Calafell F, Helal A, Bouzerna N, Lefranc G, Bertranpetit J, Comas D (2003) Joining the pillars of Hercules: mtDNA sequences show multidirectional gene flow in the western Mediterranean. Ann Hum Genet 67:312–328PubMedCrossRef

16.

Inturri S, Menegon S, Amoroso A, Torre C, Robino C (2010) Linkage and linkage disequilibrium analysis of X-STRs in Italian families. Forensic Sci Int Genet. doi:10.1016/j.fsigen.2010.10.012

17.

Hill CR, Duewer DL, Kline MC et al (2010) Concordance and population studies along with stutter and peak height ratio analysis for the PowerPlex((R)) ESX 17 and ESI 17 Systems. Forensic Sci Int Genet. doi:10.1016/j.fsigen.2010.03.014

18.

Leibelt C, Budowle B, Collins P et al (2003) Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles. Forensic Sci Int 133:220–227PubMedCrossRef

19.

Tillmar AO, Mostad P, Egeland T, Lindblom B, Holmlund G, Montelius K (2008) Analysis of linkage and linkage disequilibrium for eight X-STR markers. Forensic Sci Int Genet 3:37–41PubMedCrossRef

20.

Tishkoff SA, Williams SM (2002) Genetic analysis of African populations: human evolution and complex disease. Nat Rev Genet 3:611–621PubMedCrossRef

21.

Tillmar AO, Egeland T, Lindblom B, Holmlund G, Mostad P (2010) Using X-chromosomal markers in relationship testing: calculation of likelihood ratios taking both linkage and linkage disequilibrium into account. Forensic Sci Int Genet. doi:10.1016/j.fsigen.2010.11.004

22.

Robino C, Giolitti A, Gino S, Torre C (2006) Development of two multiplex PCR systems for the analysis of 12 X-chromosomal STR loci in a northwestern Italian population sample. Int J Legal Med 120:315–318PubMedCrossRef

23.

Gomes I, Prinz M, Pereira R et al (2007) Genetic analysis of three US population groups using an X-chromosomal STR decaplex. Int J Legal Med 121:198–203PubMedCrossRef

24.

Pereira R, Gomes I, Amorim A, Gusmao L (2007) Genetic diversity of 10 X chromosome STRs in northern Portugal. Int J Legal Med 121:192–197PubMedCrossRef

25.

Aler M, Sánchez-Diz P, Gomes I et al (2007) Genetic data of 10 X-STRs in a Spanish population sample. Forensic Sci Int 173:193–196PubMedCrossRef

26.

Tariq MA, Ullah O, Riazuddin SA, Riazuddin S (2008) Allele frequency distribution of 13 X-chromosomal STR loci in Pakistani population. Int J Legal Med 122:525–528PubMedCrossRef

27.

Tariq MA, Sabir MF, Riazuddin SA, Riazuddin S (2009) Haplotype analysis of two X-chromosome STR clusters in the Pakistani population. Int J Legal Med 123:85–87PubMedCrossRef

28.

Szibor R, Edelmann J, Hering S, Gomes I, Gusmão L (2009) Nomenclature discrepancies in the HPRTB short tandem repeat. Int J Legal Med 123:185–186PubMedCrossRef

29.

Tishkoff SA, Reed FA, Friedlaender FR et al (2009) The genetic structure and history of Africans and African Americans. Science 324:1035–1044PubMedCrossRef

30.

Santos-Lopes SS, Pereira RW, Wilson IJ, Pena SD (2007) A worldwide phylogeography for the human X chromosome. PLoS One 2:e557PubMedCrossRef

31.

Karlsson AO, Holmlund G, Egeland T, Mostad P (2007) DNA-testing for immigration cases: the risk of erroneous conclusions. Forensic Sci Int 172:144–149PubMedCrossRef

32.

Pinto N, Gusmão L, Amorim A (2011) X-chromosome markers in kinship testing: a generalisation of the IBD approach identifying situations where their contribution is crucial. Forensic Sci Int Genet 5:27–32PubMedCrossRef

Titel: Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast
verfasst von: Serena Pasino
Stefano Caratti
Massimiliano Del Pero
Alfredo Santovito
Carlo Torre
Carlo Robino
Publikationsdatum: 01.09.2011
Verlag: Springer-Verlag
Erschienen in: International Journal of Legal Medicine / Ausgabe 5/2011
Print ISSN: 0937-9827
Elektronische ISSN: 1437-1596
DOI: https://doi.org/10.1007/s00414-011-0591-4

Springer Medizin

Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast

Abstract

Neu im Fachgebiet Rechtsmedizin

Molekularpathologische Untersuchungen im Wandel der Zeit

Vergleichende Pathologie in der onkologischen Forschung

Gastrointestinale Stromatumoren

Personalisierte Medizin in der Onkologie

Springer Medizin

Abstract

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